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Report for CCDS43085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43085.1 Public Homo sapiens 3 ZNF589 24 110 108 CCDS HistoryNCBI Gene:51385Re-query CCDS DB by CCDS ID:43085.1Re-query CCDS DB by GeneID:51385See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43085.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354698.8 ENSP00000346729.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354698.8Link to Ensembl Protein Viewer:ENSP00000346729.3Re-query CCDS DB by Nucleotide ID:ENST00000354698Re-query CCDS DB by Protein ID:ENSP00000346729
Original member Current member EBI ENST00000448461.5 ENSP00000404592.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448461.5Link to Ensembl Protein Viewer:ENSP00000404592.1Re-query CCDS DB by Nucleotide ID:ENST00000448461Re-query CCDS DB by Protein ID:ENSP00000404592
Original member Current member NCBI NM_016089.3 NP_057173.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016089.3Link to Protein Sequence:NP_057173.2Re-query CCDS DB by Nucleotide ID:NM_016089Re-query CCDS DB by Protein ID:NP_057173Link to BLAST:NP_057173.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057173.2 364 Q86UQ0-1 364 100% 0 0

Chromosomal Locations for CCDS 43085.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 48241172 48241214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48247625 48247677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48260813 48260939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48267915 48268786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGTGGGCCCCGCGGGAGCAGCTACTGGGCTGGACTGCGGAAGCTCTGCCTGCCAAGGATTCTGCCTGGC
CCTGGGAAGAGAAGCCTAGATATCTGGGACCAGTGACTTTCGAGGATGTGGCTGTGCTTTTCACTGAGGC
AGAGTGGAAGAGACTGAGCCTTGAGCAGAGGAACCTATACAAAGAAGTGATGCTGGAAAATCTCAGGAAT
CTGGTCTCATTGGCAGAATCAAAGCCAGAAGTCCATACCTGCCCTTCTTGCCCTCTGGCCTTTGGCAGTC
AGCAGTTCCTCAGCCAAGATGAGCTACACAATCATCCTATTCCAGGTTTCCATGCAGGAAATCAACTCCA
CCCAGGAAATCCCTGCCCAGAGGATCAGCCACAGTCACAACATCCTTCTGATAAAAATCACAGGGGGGCT
GAAGCAGAAGATCAACGAGTGGAAGGAGGCGTCAGACCCTTGTTTTGGAGTACAAATGAAAGGGGGGCTT
TAGTGGGTTTCTCTAGCCTGTTCCAGAGACCACCAATAAGCTCTTGGGGAGGCAACAGAATATTAGAGAT
ACAGCTCAGTCCAGCCCAGAATGCAAGCTCTGAGGAAGTAGACAGAATTTCCAAGAGGGCAGAAACCCCA
GGGTTTGGAGCAGTCACGTTTGGGGAGTGTGCACTAGCTTTTAACCAGAAGTCAAACCTGTTCAGACAGA
AGGCAGTCACAGCAGAAAAATCTTCAGACAAAAGGCAGTCACAGGTGTGCAGGGAGTGTGGGCGAGGCTT
TAGCAGGAAGTCACAGCTCATCATACACCAGAGGACACACACAGGAGAAAAGCCTTATGTCTGCGGAGAG
TGTGGGCGAGGCTTTATAGTTGAGTCAGTCCTCCGCAACCACCTGAGTACACACTCCGGGGAGAAACCTT
ATGTGTGCAGCCATTGTGGGCGAGGCTTTAGCTGCAAGCCATACCTCATCAGACATCAGAGGACACACAC
AAGGGAGAAATCGTTTATGTGCACAGTGTGTGGGCGAGGCTTTCGTGAAAAGTCAGAGCTCATTAAGCAC
CAGAGAATTCACACGGGGGATAAGCCTTATGTGTGCAGAGATTGA

Translation (364 aa):
MWAPREQLLGWTAEALPAKDSAWPWEEKPRYLGPVTFEDVAVLFTEAEWKRLSLEQRNLYKEVMLENLRN
LVSLAESKPEVHTCPSCPLAFGSQQFLSQDELHNHPIPGFHAGNQLHPGNPCPEDQPQSQHPSDKNHRGA
EAEDQRVEGGVRPLFWSTNERGALVGFSSLFQRPPISSWGGNRILEIQLSPAQNASSEEVDRISKRAETP
GFGAVTFGECALAFNQKSNLFRQKAVTAEKSSDKRQSQVCRECGRGFSRKSQLIIHQRTHTGEKPYVCGE
CGRGFIVESVLRNHLSTHSGEKPYVCSHCGRGFSCKPYLIRHQRTHTREKSFMCTVCGRGFREKSELIKH
QRIHTGDKPYVCRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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