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Report for CCDS51.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51.1 Public Homo sapiens 1 LRRC47 24 110 108 CCDS HistoryNCBI Gene:57470Re-query CCDS DB by CCDS ID:51.1Re-query CCDS DB by GeneID:57470See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378251.3 ENSP00000367498.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378251.3Link to Ensembl Protein Viewer:ENSP00000367498.1Re-query CCDS DB by Nucleotide ID:ENST00000378251Re-query CCDS DB by Protein ID:ENSP00000367498
Original member Current member NCBI NM_020710.3 NP_065761.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020710.3Link to Protein Sequence:NP_065761.1Re-query CCDS DB by Nucleotide ID:NM_020710Re-query CCDS DB by Protein ID:NP_065761Link to BLAST:NP_065761.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065761.1 583 Q8N1G4 583 100% 0 0

Chromosomal Locations for CCDS 51.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 3781088 3781336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3781512 3781601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3782661 3782763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3783996 3784111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3785087 3785203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3786849 3787310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 3795862 3796476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGGCGGCGGCAGCGGTGTCAGAGTCTTGGCCGGAGCTGGAGCTGGCTGAGCGCGAGCGGCGGCGGGAGC
TGCTGCTGACGGGGCCCGGGCTGGAGGAGCGAGTGCGGGCGGCGGGTGGGCAGCTGCCGCCGCGGCTTTT
CACCCTGCCGCTGCTGCACTACTTGGAAGTGAGCGGCTGCGGGAGCTTGCGCGCGCCGGGGCCTGGCCTG
GCGCAGGGCCTGCCGCAGCTGCACAGCCTCGTGCTGCGGCGCAACGCGCTGGGGCCCGGCCTGAGCCCCG
AGCTCGGGCCGCTGCCTGCCCTTCGGGTGCTCGACCTGTCGGGCAACGCGCTGGAGGCGCTGCCGCCGGG
CCAAGGCCTGGGCCCCGCCGAGCCGCCGGGCCTTCCGCAGCTGCAGAGCCTCAACCTCAGCGGCAACCGG
CTGCGCGAGCTGCCAGCCGACCTGGCGCGCTGCGCCCCGCGCCTGCAGAGCCTCAACCTCACCGGCAATT
GCCTAGACTCCTTTCCCGCCGAGCTCTTTCGCCCCGGCGCGCTGCCCCTGCTCAGTGAACTGGCGGCTGC
TGACAACTGCCTCCGAGAACTCAGCCCCGACATCGCCCACCTGGCCTCGCTCAAGACGTTGGACCTCTCG
AACAACCAGCTGAGCGAGATCCCTGCAGAGCTTGCGGACTGCCCCAAGCTCAAGGAGATCAATTTCCGTG
GGAACAAGCTGAGGGACAAGCGCCTGGAGAAGATGGTCAGCGGCTGCCAGACCAGATCCATCCTGGAGTA
CCTGCGCGTCGGAGGCCGTGGTGGCGGGAAGGGCAAGGGCCGTGCCGAGGGCTCGGAGAAGGAAGAGAGC
CGGAGGAAGAGGAGGGAGAGGAAGCAGAGGCGGGAAGGTGGTGATGGGGAGGAGCAGGACGTGGGAGATG
CCGGCCGGCTGCTGCTCAGGGTCCTGCACGTCTCTGAAAACCCCGTACCTCTGACAGTCAGAGTGAGCCC
CGAGGTCCGGGATGTGCGGCCCTACATTGTGGGGGCCGTGGTGCGAGGCATGGACCTGCAGCCAGGGAAT
GCACTCAAGCGCTTCCTCACCTCGCAGACCAAGCTCCACGAAGATCTCTGTGAGAAGAGGACGGCTGCCA
CCCTTGCCACCCACGAGCTCCGTGCCGTCAAAGGGCCCCTGCTGTACTGCGCCCGGCCCCCACAGGACCT
CAAGATTGTCCCCTTGGGGCGGAAAGAAGCCAAGGCCAAGGAGCTGGTGCGGCAGCTGCAGCTGGAGGCC
GAGGAGCAGAGGAAGCAGAAGAAGCGGCAGAGTGTGTCGGGCCTGCACAGATACCTTCACTTGCTGGATG
GAAATGAAAATTACCCGTGTCTTGTGGATGCAGACGGTGATGTGATTTCCTTCCCACCAATAACCAACAG
TGAGAAGACAAAGGTTAAGAAAACGACTTCTGATTTGTTTTTGGAAGTAACAAGTGCCACCAGTCTGCAG
ATTTGCAAGGATGTCATGGATGCCCTCATTCTGAAAATGGCAGAAATGAAAAAGTACACTTTAGAAAATA
AAGAGGAAGGATCACTCTCAGATACTGAAGCCGATGCAGTCTCTGGACAACTTCCAGATCCCACAACGAA
TCCCAGTGCTGGAAAGGACGGGCCCTCCCTTCTGGTGGTGGAGCAGGTCCGGGTGGTGGATCTGGAAGGG
AGCCTGAAGGTGGTGTACCCGTCCAAGGCCGACCTGGCCACTGCCCCTCCCCACGTGACTGTCGTGCGCT
GA

Translation (583 aa):
MAAAAVSESWPELELAERERRRELLLTGPGLEERVRAAGGQLPPRLFTLPLLHYLEVSGCGSLRAPGPGL
AQGLPQLHSLVLRRNALGPGLSPELGPLPALRVLDLSGNALEALPPGQGLGPAEPPGLPQLQSLNLSGNR
LRELPADLARCAPRLQSLNLTGNCLDSFPAELFRPGALPLLSELAAADNCLRELSPDIAHLASLKTLDLS
NNQLSEIPAELADCPKLKEINFRGNKLRDKRLEKMVSGCQTRSILEYLRVGGRGGGKGKGRAEGSEKEES
RRKRRERKQRREGGDGEEQDVGDAGRLLLRVLHVSENPVPLTVRVSPEVRDVRPYIVGAVVRGMDLQPGN
ALKRFLTSQTKLHEDLCEKRTAATLATHELRAVKGPLLYCARPPQDLKIVPLGRKEAKAKELVRQLQLEA
EEQRKQKKRQSVSGLHRYLHLLDGNENYPCLVDADGDVISFPPITNSEKTKVKKTTSDLFLEVTSATSLQ
ICKDVMDALILKMAEMKKYTLENKEEGSLSDTEADAVSGQLPDPTTNPSAGKDGPSLLVVEQVRVVDLEG
SLKVVYPSKADLATAPPHVTVVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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