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Report for CCDS13411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13411.1 Public Homo sapiens 20 ARFGEF2 24 110 108 CCDS HistoryNCBI Gene:10564Re-query CCDS DB by CCDS ID:13411.1Re-query CCDS DB by GeneID:10564See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371917.5 ENSP00000360985.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371917.5Link to Ensembl Protein Viewer:ENSP00000360985.4Re-query CCDS DB by Nucleotide ID:ENST00000371917Re-query CCDS DB by Protein ID:ENSP00000360985
Original member Current member NCBI NM_006420.3 NP_006411.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006420.3Link to Protein Sequence:NP_006411.2Re-query CCDS DB by Nucleotide ID:NM_006420Re-query CCDS DB by Protein ID:NP_006411Link to BLAST:NP_006411.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006411.2 1785 Q9Y6D5 1785 100% 0 0

Chromosomal Locations for CCDS 13411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 48921890 48922010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48941199 48941229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48941864 48941987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48951323 48951469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48952705 48952884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48953556 48953790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48963830 48963898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48965872 48966023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48969147 48969277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48971120 48971354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48972326 48972425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48973145 48973284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48974766 48974874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48976016 48976199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48984729 48984840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48985408 48985613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48988304 48988388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48988491 48988662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48989285 48989436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48989556 48989684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48991040 48991198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48994451 48994598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48995783 48995882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48998193 48998233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 48998336 48998505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49005070 49005221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49010232 49010404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49011924 49012084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49013564 49013694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49013831 49013960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49016280 49016415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49017249 49017387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49017496 49017550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49018884 49018998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49023051 49023181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49025313 49025481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49028530 49028668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49032049 49032166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 49033023 49033199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5358 nt):
ATGCAGGAGAGCCAGACCAAGAGCATGTTCGTGTCCCGGGCCCTGGAGAAGATCCTAGCCGACAAGGAGG
TGAAGCGGCCCCAGCACTCCCAGCTGCGCAGGGCCTGCCAGGTGGCGCTCGATGAAATTAAAGCAGAAAT
AGAAAAGCAGAGGCTTGGCACTGCTGCACCACCAAAGGCAAACTTCATTGAAGCTGACAAGTATTTTCTT
CCATTCGAGCTAGCTTGCCAGTCCAAGTCCCCAAGGGTAGTCAGCACATCCCTTGACTGCTTGCAGAAAC
TCATCGCATACGGGCACATCACTGGCAACGCCCCTGACAGTGGAGCCCCTGGGAAGCGGCTGATCGACAG
AATTGTTGAAACCATTTGCAGTTGTTTTCAGGGCCCTCAGACTGATGAAGGGGTTCAGTTACAAATAATT
AAGGCTCTTCTGACTGCAGTGACTTCCCCACACATTGAAATTCATGAGGGTACTATCCTGCAGACAGTGA
GAACATGTTACAATATCTATTTGGCCAGCAAAAATCTCATCAATCAAACCACTGCCAAGGCTACCCTTAC
TCAGATGCTGAACGTCATTTTCACCCGCATGGAAAACCAAGTGTTGCAGGAGGCCAGAGAACTGGAAAAA
CCAATCCAGTCAAAACCCCAGTCCCCTGTGATCCAAGCTGCAGCAGTATCCCCAAAGTTCGTTCGTTTGA
AGCACAGTCAGGCACAAAGCAAACCAACAACTCCCGAAAAAACAGATTTAACCAACGGTGAACATGCCAG
GAGTGATTCTGGAAAAGTAAGCACAGAAAATGGAGACGCACCCAGAGAAAGAGGCTCATCACTGTCAGGG
ACTGATGACGGAGCCCAGGAGGTGGTGAAGGACATCTTGGAAGATGTAGTCACATCTGCCATTAAAGAAG
CAGCGGAAAAGCATGGTCTGACAGAACCTGAGAGAGTTCTAGGTGAACTGGAGTGCCAGGAATGTGCTAT
TCCCCCAGGAGTTGATGAAAACTCACAGACCAACGGGATAGCCGATGACAGGCAGTCCTTGTCGTCAGCA
GATAATCTGGAATCGGATGCACAAGGACATCAAGTGGCTGCCAGGTTCTCCCACGTTCTGCAGAAGGATG
CCTTCCTTGTGTTCCGCTCCCTGTGCAAGCTGTCCATGAAACCCCTTGGTGAAGGCCCTCCAGACCCAAA
ATCCCATGAGCTGCGTTCCAAGGTGGTTTCCCTGCAGCTGCTCCTCTCTGTGTTGCAAAATGCTGGCCCC
GTATTCAGGACTCACGAGATGTTCATCAATGCAATCAAGCAATATCTCTGTGTGGCCTTGTCCAAAAACG
GCGTCTCTTCAGTGCCTGATGTCTTTGAGCTCTCTCTTGCCATTTTTCTTACTCTTCTTTCAAACTTTAA
AATGCACTTGAAAATGCAGATAGAGGTCTTTTTCAAAGAGATTTTCCTGAACATTTTAGAAACATCAACA
AGTTCTTTTGAGCACAGGTGGATGGTCATTCAGACTCTGACGAGGATCTGTGCAGATGCCCAGTGTGTTG
TGGATATTTATGTCAACTACGACTGTGATTTAAATGCTGCTAACATTTTTGAGCGCCTTGTAAATGATTT
ATCCAAAATTGCTCAGGGAAGAAGTGGACATGAGCTGGGAATGACACCTCTGCAGGAGCTCAGCCTGAGG
AAGAAAGGCCTGGAGTGCCTCGTGTCCATTCTCAAGTGCATGGTGGAGTGGAGCAAAGACCTGTATGTGA
ATCCCAACCACCAGACCAGCCTCGGTCAGGAGAGGCTCACGGATCAGGAAATAGGGGATGGGAAAGGCCT
TGACATGGCAAGACGGTGTAGTGTGACGTCCATGGAGTCCACAGTGTCCTCGGGGACCCAGACAACTGTT
CAGGATGACCCTGAGCAATTTGAGGTCATCAAGCAACAAAAAGAAATCATTGAACACGGCATCGAGCTGT
TCAACAAGAAACCCAAGAGGGGGATCCAGTTTCTCCAGGAGCAGGGCATGCTGGGAACGTCAGTTGAAGA
CATAGCCCAATTCCTGCACCAGGAGGAGCGCCTGGATTCCACCCAAGTAGGCGATTTTCTGGGAGATAGC
GCAAGGTTCAACAAGGAGGTGATGTATGCCTACGTGGACCAACTTGACTTCTGTGAAAAAGAATTTGTCT
CAGCCCTGCGGACATTCCTAGAAGGTTTCCGCCTACCTGGAGAAGCCCAAAAGATTGACCGATTAATGGA
GAAGTTTGCCGCAAGATACATAGAATGCAACCAAGGGCAAACTCTGTTTGCTAGTGCTGACACTGCTTAT
GTCCTAGCGTATTCAATTATTATGCTGACTACAGACTTGCACAGTCCTCAGGTAAAAAATAAAATGACGA
AAGAGCAGTATATTAAAATGAATCGGGGTATCAATGATAGTAAAGATCTGCCAGAAGAGTATCTCTCAAG
CATCTATGAAGAGATAGAAGGCAAGAAAATTGCAATGAAAGAAACAAAAGAGCTAACGATTGCAACCAAA
TCTACTAAGCAGAATGTAGCTAGTGAAAAGCAGCGGCGGCTGCTGTACAACTTAGAGATGGAGCAAATGG
CTAAAACAGCCAAAGCTCTGATGGAGGCTGTGAGCCATGCCAAAGCCCCGTTTACCAGTGCCACTCACCT
GGACCATGTCCGGCCAATGTTCAAACTGGTGTGGACGCCACTATTGGCAGCCTACAGCATCGGACTCCAG
AACTGTGATGACACTGAAGTGGCCTCCTTGTGTTTGGAAGGCATCCGATGTGCAATCCGAATCGCCTGCA
TCTTTGGAATGCAGCTGGAACGAGATGCCTATGTTCAGGCTCTTGCTCGCTTCTCCCTACTCACAGCCAG
CTCCAGCATCACAGAAATGAAGCAGAAAAACATCGACACCATTAAGACGCTTATCACAGTGGCTCACACC
GATGGCAACTACCTTGGGAATTCCTGGCATGAGATCTTGAAATGCATCAGCCAGCTGGAGCTCGCTCAGC
TGATAGGAACCGGTGTGAAGACGCGCTACCTGTCTGGATCTGGGCGTGAAAGAGAAGGGAGCCTGAAGGG
CCACACATTGGCAGGAGAAGAGTTCATGGGCCTTGGCCTCGGTAATTTGGTGAGTGGCGGAGTGGATAAA
AGACAGATGGCCAGCTTCCAAGAATCGGTTGGTGAGACCAGCTCGCAGAGTGTGGTTGTAGCTGTGGACA
GGATTTTTACTGGGTCTACCAGACTGGATGGAAATGCAATAGTTGACTTTGTCCGCTGGCTGTGTGCTGT
GTCCATGGATGAACTGGCTTCCCCCCACCATCCTCGCATGTTCAGCTTGCAGAAGATTGTGGAGATATCA
TACTACAACATGAATCGGATCCGACTACAGTGGTCTCGAATATGGCATGTGATTGGAGATCACTTCAATA
AGGTTGGCTGCAACCCTAATGAAGATGTGGCTATCTTTGCTGTTGACTCATTAAGGCAACTCTCCATGAA
GTTTCTTGAGAAGGGTGAATTAGCCAACTTCCGTTTCCAGAAAGATTTTCTGAGGCCCTTTGAGCATATT
ATGAAGAAAAACAGGTCTCCCACCATCCGGGACATGGCGATCCGCTGCATTGCCCAGATGGTGAACTCCC
AGGCGGCCAACATCCGCTCAGGTTGGAAGAACATCTTTGCCGTGTTCCACCAGGCAGCCTCTGATCATGA
TGGGAACATTGTGGAGCTGGCCTTCCAGACCACTTGCCACATTGTCACAACTATTTTCCAGCACCATTTT
CCTGCAGCCATCGATTCCTTTCAGGATGCTGTGAAGTGCTTATCAGAGTTCGCCTGCAACGCCGCTTTCC
CTGACACGAGCATGGAAGCGATTCGGCTCATCCGCTTCTGTGGCAAATACGTCTCTGAGAGGCCTCGGGT
GCTACAAGAATACACAAGTGATGACATGAATGTAGCTCCTGGTGACAGAGTCTGGGTCCGAGGCTGGTTC
CCCATCTTATTCGAACTCTCCTGCATCATTAATAGATGCAAGTTAGATGTACGAACAAGGGGACTCACAG
TCATGTTTGAGATCATGAAGAGCTATGGCCACACCTTTGAAAAGCACTGGTGGCAGGACCTGTTCAGAAT
CGTGTTTCGGATTTTTGACAATATGAAACTCCCTGAGCAACTGTCAGAGAAATCTGAGTGGATGACAACA
ACCTGCAATCACGCACTTTATGCTATTTGTGATGTTTTTACCCAGTTTTATGAAGCTTTGAATGAAGTTC
TTCTTTCTGATGTATTTGCACAATTGCAGTGGTGTGTCAAACAAGATAATGAACAGTTGGCGCGATCAGG
TACAAATTGCTTAGAAAACTTAGTAATATCCAATGGAGAGAAATTCAGTCCTGAAGTCTGGGATGAAACC
TGCAACTGTATGTTGGATATTTTCAAAACAACCATCCCACATGTTTTGCTGACATGGAGACCTGTAGGAA
TGGAGGAAGATTCATCAGAAAAGCATTTGGATGTGGATCTGGACCGCCAGTCTTTAAGCAGCATAGATAA
AAATCCCTCTGAGAGGGGACAGAGCCAGCTCTCTAACCCAACAGATGACAGCTGGAAGGGTAGACCATAC
GCAAATCAGAAACTGTTTGCCAGCCTCCTCATCAAGTGTGTGGTCCAGTTGGAATTGATACAGACCATTG
ACAACATTGTGTTCTACCCTGCGACGAGCAAAAAGGAGGATGCAGAGCACATGGTTGCCGCCCAGCAAGA
CACGCTGGATGCAGATATCCACATAGAGACGGAGGATCAGGGCATGTATAAGTACATGTCTTCCCAGCAC
CTCTTCAAGCTGTTGGACTGTTTGCAGGAATCCCATTCATTCTCAAAGGCCTTCAACTCCAATTACGAGC
AGCGGACTGTCCTGTGGCGAGCAGGTTTTAAGGGCAAGTCTAAACCCAATCTTCTAAAACAAGAAACCAG
CAGCCTGGCCTGTTGTTTGAGGATCCTGTTTCGAATGTATGTTGATGAGAACCGCAGGGATTCCTGGGAA
GAAATACAGCAGAGACTTTTAACTGTTTGCAGTGAAGCTCTTGCCTATTTCATCACTGTGAATTCTGAGA
GCCATCGGGAGGCCTGGACAAGTCTCTTGTTGTTACTTCTAACTAAAACCCTCAAAATAAATGATGAAAA
GTTCAAAGCACATGCTTCAATGTACTACCCCTACTTGTGTGAAATTATGCAGTTTGACCTGATCCCTGAG
CTCCGAGCAGTTCTGCGGAAGTTCTTCCTACGGATAGGTGTTGTGTATAAGATATGGATACCAGAAGAGC
CATCACAGGTACCAGCAGCACTGTCACCAGTGTGGTAG

Translation (1785 aa):
MQESQTKSMFVSRALEKILADKEVKRPQHSQLRRACQVALDEIKAEIEKQRLGTAAPPKANFIEADKYFL
PFELACQSKSPRVVSTSLDCLQKLIAYGHITGNAPDSGAPGKRLIDRIVETICSCFQGPQTDEGVQLQII
KALLTAVTSPHIEIHEGTILQTVRTCYNIYLASKNLINQTTAKATLTQMLNVIFTRMENQVLQEARELEK
PIQSKPQSPVIQAAAVSPKFVRLKHSQAQSKPTTPEKTDLTNGEHARSDSGKVSTENGDAPRERGSSLSG
TDDGAQEVVKDILEDVVTSAIKEAAEKHGLTEPERVLGELECQECAIPPGVDENSQTNGIADDRQSLSSA
DNLESDAQGHQVAARFSHVLQKDAFLVFRSLCKLSMKPLGEGPPDPKSHELRSKVVSLQLLLSVLQNAGP
VFRTHEMFINAIKQYLCVALSKNGVSSVPDVFELSLAIFLTLLSNFKMHLKMQIEVFFKEIFLNILETST
SSFEHRWMVIQTLTRICADAQCVVDIYVNYDCDLNAANIFERLVNDLSKIAQGRSGHELGMTPLQELSLR
KKGLECLVSILKCMVEWSKDLYVNPNHQTSLGQERLTDQEIGDGKGLDMARRCSVTSMESTVSSGTQTTV
QDDPEQFEVIKQQKEIIEHGIELFNKKPKRGIQFLQEQGMLGTSVEDIAQFLHQEERLDSTQVGDFLGDS
ARFNKEVMYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLMEKFAARYIECNQGQTLFASADTAY
VLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSSIYEEIEGKKIAMKETKELTIATK
STKQNVASEKQRRLLYNLEMEQMAKTAKALMEAVSHAKAPFTSATHLDHVRPMFKLVWTPLLAAYSIGLQ
NCDDTEVASLCLEGIRCAIRIACIFGMQLERDAYVQALARFSLLTASSSITEMKQKNIDTIKTLITVAHT
DGNYLGNSWHEILKCISQLELAQLIGTGVKTRYLSGSGREREGSLKGHTLAGEEFMGLGLGNLVSGGVDK
RQMASFQESVGETSSQSVVVAVDRIFTGSTRLDGNAIVDFVRWLCAVSMDELASPHHPRMFSLQKIVEIS
YYNMNRIRLQWSRIWHVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHI
MKKNRSPTIRDMAIRCIAQMVNSQAANIRSGWKNIFAVFHQAASDHDGNIVELAFQTTCHIVTTIFQHHF
PAAIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRFCGKYVSERPRVLQEYTSDDMNVAPGDRVWVRGWF
PILFELSCIINRCKLDVRTRGLTVMFEIMKSYGHTFEKHWWQDLFRIVFRIFDNMKLPEQLSEKSEWMTT
TCNHALYAICDVFTQFYEALNEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLVISNGEKFSPEVWDET
CNCMLDIFKTTIPHVLLTWRPVGMEEDSSEKHLDVDLDRQSLSSIDKNPSERGQSQLSNPTDDSWKGRPY
ANQKLFASLLIKCVVQLELIQTIDNIVFYPATSKKEDAEHMVAAQQDTLDADIHIETEDQGMYKYMSSQH
LFKLLDCLQESHSFSKAFNSNYEQRTVLWRAGFKGKSKPNLLKQETSSLACCLRILFRMYVDENRRDSWE
EIQQRLLTVCSEALAYFITVNSESHREAWTSLLLLLLTKTLKINDEKFKAHASMYYPYLCEIMQFDLIPE
LRAVLRKFFLRIGVVYKIWIPEEPSQVPAALSPVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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