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Report for CCDS43917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43917.1 Public Homo sapiens XY ASMTL 24 110 108 CCDS HistoryNCBI Gene:8623Re-query CCDS DB by CCDS ID:43917.1Re-query CCDS DB by GeneID:8623See the combined annotation on chromosome X in Sequence ViewerSee the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43917.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381317.9 ENSP00000370718.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381317.9Link to Ensembl Protein Viewer:ENSP00000370718.3Re-query CCDS DB by Nucleotide ID:ENST00000381317Re-query CCDS DB by Protein ID:ENSP00000370718
Original member Current member NCBI NM_004192.4 NP_004183.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004192.4Link to Protein Sequence:NP_004183.2Re-query CCDS DB by Nucleotide ID:NM_004192Re-query CCDS DB by Protein ID:NP_004183Link to BLAST:NP_004183.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004183.2 621 O95671-1 621 100% 0 0

Chromosomal Locations for CCDS 43917.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11) On '-' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
X 1403269 1403489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1412732 1412854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1417973 1418116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1418982 1419114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1421658 1421842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1425525 1425687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1427734 1428121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1432269 1432377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1435022 1435083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1435694 1435758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1439097 1439144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1442186 1442317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 1452748 1452840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

Chromosome Start Stop Links
Y 1403269 1403489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1412732 1412854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1417973 1418116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1418982 1419114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1421658 1421842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1425525 1425687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1427734 1428121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1432269 1432377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1435022 1435083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1435694 1435758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1439097 1439144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1442186 1442317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 1452748 1452840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGGTGCTGTGCCCGGTGATTGGGAAGCTGCTGCACAAGCGCGTGGTGCTGGCCAGCGCCTCCCCACGCC
GTCAGGAGATCCTCAGCAACGCGGGTCTCAGGTTTGAGGTGGTCCCCTCCAAGTTTAAAGAGAAGCTGGA
CAAAGCCTCCTTCGCTACTCCGTATGGGTACGCCATGGAGACCGCCAAGCAGAAGGCCCTGGAGGTGGCC
AACCGGCTGTACCAGAAAGACCTGCGGGCCCCCGACGTGGTCATTGGAGCGGACACGATCGTGACAGTCG
GGGGGCTGATTCTGGAGAAGCCGGTGGACAAGCAGGACGCCTACAGGATGCTGTCCCGGTTGAGTGGGAG
AGAACACAGCGTGTTCACAGGTGTCGCGATCGTCCACTGCTCCAGCAAAGACCATCAGCTGGACACCAGG
GTCTCGGAATTCTACGAGGAAACGAAGGTGAAGTTCTCGGAGCTGTCCGAGGAGCTGCTCTGGGAATACG
TCCACAGCGGGGAGCCCATGGACAAAGCTGGCGGCTACGGGATCCAGGCCCTGGGCGGCATGCTGGTGGA
GTCCGTACACGGGGACTTTCTGAACGTGGTGGGATTCCCGCTGAACCACTTCTGCAAGCAGCTGGTGAAG
CTCTACTACCCGCCCCGTCCGGAGGACCTGCGGCGGAGTGTCAAGCACGACTCCATCCCGGCCGCGGACA
CCTTCGAAGACCTCAGTGACGTGGAGGGGGGCGGCTCGGAGCCCACTCAGAGGGACGCGGGCAGCCGCGA
TGAGAAGGCCGAGGCGGGAGAGGCGGGACAGGCCACGGCAGAGGCTGAGTGTCACAGGACTCGGGAGACC
CTGCCTCCGTTCCCGACACGCCTCCTGGAGCTGATTGAGGGCTTTATGCTATCCAAGGGCCTGCTCACCG
CTTGCAAACTGAAGGTGTTCGATTTGTTAAAAGATGAAGCACCCCAGAAGGCTGCGGATATTGCCAGCAA
AGTGGACGCCTCTGCGTGTGGAATGGAGAGGCTTCTGGACATCTGTGCTGCCATGGGGCTCCTGGAGAAG
ACAGAGCAAGGTTACAGTAACACAGAGACAGCGAACGTCTACCTGGCATCGGATGGCGAATACTCTCTGC
ACGGCTTCATCATGCACAATAATGACCTCACATGGAACCTCTTTACATACCTGGAGTTTGCCATCCGAGA
GGGAACAAACCAGCACCACAGGGCGTTGGGGAAGAAGGCGGAAGATCTGTTCCAGGATGCGTACTACCAG
AGCCCGGAGACGCGGCTGAGGTTCATGCGGGCCATGCACGGCATGACGAAGCTGACTGCGTGCCAGGTGG
CCACGGCCTTCAATCTGTCCCGCTTCTCCTCCGCCTGCGACGTGGGAGGCTGCACGGGTGCACTGGCCCG
AGAGCTGGCCCGTGAGTACCCTCGTATGCAGGTGACTGTGTTTGACCTCCCAGACATTATCGAGCTGGCC
GCCCACTTCCAACCCCCCGGACCGCAGGCAGTGCAGATCCACTTCGCAGCAGGTGACTTTTTCAGGGACC
CCCTCCCCAGCGCTGAGCTGTACGTCCTGTGCCGGATCCTGCATGACTGGCCAGACGACAAAGTCCACAA
GTTACTCAGCAGGGTCGCCGAGAGCTGCAAGCCAGGGGCCGGCCTGCTGCTGGTGGAGACGCTCCTGGAT
GAGGAGAAGAGGGTGGCGCAGCGCGCCCTGATGCAGTCACTGAACATGCTGGTGCAGACTGAAGGCAAGG
AGCGGAGCCTGGGCGAGTATCAGTGCTTGCTGGAGCTGCACGGCTTCCACCAGGTGCAGGTGGTGCACTT
GGGGGGTGTCCTGGATGCCATCTTGGCCACCAAAGTGGCCCCCTGA

Translation (621 aa):
MVLCPVIGKLLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAMETAKQKALEVA
NRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHSVFTGVAIVHCSSKDHQLDTR
VSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQALGGMLVESVHGDFLNVVGFPLNHFCKQLVK
LYYPPRPEDLRRSVKHDSIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRET
LPPFPTRLLELIEGFMLSKGLLTACKLKVFDLLKDEAPQKAADIASKVDASACGMERLLDICAAMGLLEK
TEQGYSNTETANVYLASDGEYSLHGFIMHNNDLTWNLFTYLEFAIREGTNQHHRALGKKAEDLFQDAYYQ
SPETRLRFMRAMHGMTKLTACQVATAFNLSRFSSACDVGGCTGALARELAREYPRMQVTVFDLPDIIELA
AHFQPPGPQAVQIHFAAGDFFRDPLPSAELYVLCRILHDWPDDKVHKLLSRVAESCKPGAGLLLVETLLD
EEKRVAQRALMQSLNMLVQTEGKERSLGEYQCLLELHGFHQVQVVHLGGVLDAILATKVAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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