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Report for CCDS33435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33435.1 Public Homo sapiens 20 TGM3 24 110 108 CCDS HistoryNCBI Gene:7053Re-query CCDS DB by CCDS ID:33435.1Re-query CCDS DB by GeneID:7053See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33435.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381458.6 ENSP00000370867.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381458.6Link to Ensembl Protein Viewer:ENSP00000370867.5Re-query CCDS DB by Nucleotide ID:ENST00000381458Re-query CCDS DB by Protein ID:ENSP00000370867
Original member Current member NCBI NM_003245.4 NP_003236.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003245.4Link to Protein Sequence:NP_003236.3Re-query CCDS DB by Nucleotide ID:NM_003245Re-query CCDS DB by Protein ID:NP_003236Link to BLAST:NP_003236.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003236.3 693 Q08188 693 100% 0 0

Chromosomal Locations for CCDS 33435.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 2296064 2296070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2309657 2309830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2310178 2310417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2311011 2311129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2312898 2313026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2317068 2317245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2317350 2317485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2325849 2325952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2328120 2328365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2332002 2332310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2335116 2335273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2339854 2339987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 2340434 2340581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2082 nt):
ATGGCTGCTCTAGGAGTCCAGAGTATCAACTGGCAGACGGCCTTCAACCGACAAGCGCATCACACAGACA
AGTTCTCCAGCCAGGAGCTCATCTTGCGGAGAGGCCAAAACTTCCAGGTCTTAATGATCATGAACAAAGG
CCTTGGCTCTAACGAAAGACTGGAGTTCATTGTCTCCACAGGGCCTTACCCCTCAGAGTCGGCCATGACG
AAGGCTGTGTTTCCACTCTCCAATGGCAGTAGTGGTGGCTGGAGTGCGGTGCTTCAGGCCAGCAATGGCA
ATACTCTGACTATCAGCATCTCCAGTCCTGCCAGCGCACCCATAGGACGGTACACAATGGCCCTCCAGAT
CTTCTCCCAGGGCGGCATCTCCTCTGTGAAACTTGGGACGTTCATACTGCTTTTTAACCCCTGGCTGAAT
GTGGATAGCGTCTTTATGGGTAACCACGCTGAGAGAGAAGAGTATGTTCAGGAAGATGCCGGCATCATCT
TTGTGGGAAGCACAAACCGAATTGGCATGATTGGCTGGAACTTTGGACAGTTTGAAGAAGACATTCTCAG
CATCTGCCTCTCAATCTTGGATAGGAGTCTGAATTTCCGCCGTGACGCTGCTACTGATGTGGCCAGCAGA
AATGACCCCAAATACGTTGGCCGGGTGCTGAGTGCCATGATCAATAGCAATGATGACAATGGTGTGCTTG
CTGGGAATTGGAGCGGCACTTACACCGGTGGCCGGGACCCAAGGAGCTGGAACGGCAGCGTGGAGATCCT
CAAAAATTGGAAAAAATCTGGCTTCAGCCCAGTCCGATATGGCCAGTGCTGGGTCTTTGCTGGGACCCTC
AACACAGCGCTGCGGTCTTTGGGGATTCCTTCCCGGGTGATCACCAACTTCAACTCAGCTCATGACACAG
ACCGAAATCTCAGTGTGGATGTGTACTACGACCCCATGGGAAACCCCCTGGACAAGGGTAGTGATAGCGT
ATGGAATTTCCATGTCTGGAATGAAGGCTGGTTTGTGAGGTCTGACCTGGGCCCCTCGTACGGTGGATGG
CAGGTGTTGGATGCTACCCCGCAGGAAAGAAGCCAAGGGGTGTTCCAGTGCGGCCCCGCTTCGGTCATTG
GTGTTCGAGAGGGTGATGTGCAGCTGAACTTCGACATGCCCTTTATCTTCGCGGAGGTTAATGCCGACCG
CATCACCTGGCTGTACGACAACACCACTGGCAAACAGTGGAAGAATTCCGTGAACAGTCACACCATTGGC
AGGTACATCAGCACCAAGGCGGTGGGCAGCAATGCTCGCATGGACGTCACGGACAAGTACAAGTACCCAG
AAGGCTCTGACCAGGAAAGACAAGTGTTCCAAAAGGCTTTGGGGAAACTTAAACCCAACACGCCATTTGC
CGCGACGTCTTCAATGGGTTTGGAAACAGAGGAACAGGAGCCCAGCATCATCGGGAAGCTGAAGGTCGCT
GGCATGCTGGCAGTAGGCAAAGAAGTCAACCTGGTCCTACTGCTCAAAAACCTGAGCAGGGATACGAAGA
CAGTGACAGTGAACATGACAGCCTGGACCATCATCTACAACGGCACGCTTGTACATGAAGTGTGGAAGGA
CTCTGCCACAATGTCCCTGGACCCTGAGGAAGAGGCAGAACATCCCATAAAGATCTCGTACGCTCAGTAT
GAGAAGTACCTGAAGTCAGACAACATGATCCGGATCACAGCGGTGTGCAAGGTCCCAGATGAGTCTGAGG
TGGTGGTGGAGCGGGACATCATCCTGGACAACCCCACCTTGACCCTGGAGGTGCTGAACGAGGCTCGTGT
GCGGAAGCCTGTGAACGTGCAGATGCTCTTCTCCAATCCACTGGATGAGCCGGTGAGGGACTGCGTGCTG
ATGGTGGAGGGAAGCGGCCTGCTGTTGGGTAACCTGAAGATCGACGTGCCGACCCTAGGGCCCAAGGAGG
GGTCCCGGGTCCGTTTTGATATCCTGCCCTCCCGGAGTGGCACCAAGCAACTGCTCGCCGACTTCTCCTG
CAACAAGTTCCCTGCAATCAAGGCCATGTTGTCCATCGATGTAGCCGAATGA

Translation (693 aa):
MAALGVQSINWQTAFNRQAHHTDKFSSQELILRRGQNFQVLMIMNKGLGSNERLEFIVSTGPYPSESAMT
KAVFPLSNGSSGGWSAVLQASNGNTLTISISSPASAPIGRYTMALQIFSQGGISSVKLGTFILLFNPWLN
VDSVFMGNHAEREEYVQEDAGIIFVGSTNRIGMIGWNFGQFEEDILSICLSILDRSLNFRRDAATDVASR
NDPKYVGRVLSAMINSNDDNGVLAGNWSGTYTGGRDPRSWNGSVEILKNWKKSGFSPVRYGQCWVFAGTL
NTALRSLGIPSRVITNFNSAHDTDRNLSVDVYYDPMGNPLDKGSDSVWNFHVWNEGWFVRSDLGPSYGGW
QVLDATPQERSQGVFQCGPASVIGVREGDVQLNFDMPFIFAEVNADRITWLYDNTTGKQWKNSVNSHTIG
RYISTKAVGSNARMDVTDKYKYPEGSDQERQVFQKALGKLKPNTPFAATSSMGLETEEQEPSIIGKLKVA
GMLAVGKEVNLVLLLKNLSRDTKTVTVNMTAWTIIYNGTLVHEVWKDSATMSLDPEEEAEHPIKISYAQY
EKYLKSDNMIRITAVCKVPDESEVVVERDIILDNPTLTLEVLNEARVRKPVNVQMLFSNPLDEPVRDCVL
MVEGSGLLLGNLKIDVPTLGPKEGSRVRFDILPSRSGTKQLLADFSCNKFPAIKAMLSIDVAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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