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Report for CCDS4232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4232.1 Public Homo sapiens 5 CD14 24 110 108 CCDS HistoryNCBI Gene:929Re-query CCDS DB by CCDS ID:4232.1Re-query CCDS DB by GeneID:929See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4232.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302014.11 ENSP00000304236.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302014.11Link to Ensembl Protein Viewer:ENSP00000304236.6Re-query CCDS DB by Nucleotide ID:ENST00000302014Re-query CCDS DB by Protein ID:ENSP00000304236
Original member Current member EBI ENST00000512545.2 ENSP00000425447.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512545.2Link to Ensembl Protein Viewer:ENSP00000425447.2Re-query CCDS DB by Nucleotide ID:ENST00000512545Re-query CCDS DB by Protein ID:ENSP00000425447
Original member Current member EBI ENST00000498971.7 ENSP00000426543.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000498971.7Link to Ensembl Protein Viewer:ENSP00000426543.2Re-query CCDS DB by Nucleotide ID:ENST00000498971Re-query CCDS DB by Protein ID:ENSP00000426543
Original member Current member EBI ENST00000519715.2 ENSP00000430884.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519715.2Link to Ensembl Protein Viewer:ENSP00000430884.2Re-query CCDS DB by Nucleotide ID:ENST00000519715Re-query CCDS DB by Protein ID:ENSP00000430884
Original member Current member NCBI NM_000591.4 NP_000582.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000591.4Link to Protein Sequence:NP_000582.1Re-query CCDS DB by Nucleotide ID:NM_000591Re-query CCDS DB by Protein ID:NP_000582Link to BLAST:NP_000582.1
Original member Current member NCBI NM_001040021.3 NP_001035110.1 Accepted alive Link to Nucleotide Sequence:NM_001040021.3Link to Protein Sequence:NP_001035110.1Re-query CCDS DB by Nucleotide ID:NM_001040021Re-query CCDS DB by Protein ID:NP_001035110Link to BLAST:NP_001035110.1
Original member Current member NCBI NM_001174104.2 NP_001167575.1 Accepted alive Link to Nucleotide Sequence:NM_001174104.2Link to Protein Sequence:NP_001167575.1Re-query CCDS DB by Nucleotide ID:NM_001174104Re-query CCDS DB by Protein ID:NP_001167575Link to BLAST:NP_001167575.1
Original member Current member NCBI NM_001174105.2 NP_001167576.1 Accepted alive Link to Nucleotide Sequence:NM_001174105.2Link to Protein Sequence:NP_001167576.1Re-query CCDS DB by Nucleotide ID:NM_001174105Re-query CCDS DB by Protein ID:NP_001167576Link to BLAST:NP_001167576.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000582.1 375 P08571 375 100% 0 0
NP_001035110.1 375 P08571 375 100% 0 0
NP_001167575.1 375 P08571 375 100% 0 0
NP_001167576.1 375 P08571 375 100% 0 0

Chromosomal Locations for CCDS 4232.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140631856 140632980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140633069 140633071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGGAGCGCGCGTCCTGCTTGTTGCTGCTGCTGCTGCCGCTGGTGCACGTCTCTGCGACCACGCCAGAAC
CTTGTGAGCTGGACGATGAAGATTTCCGCTGCGTCTGCAACTTCTCCGAACCTCAGCCCGACTGGTCCGA
AGCCTTCCAGTGTGTGTCTGCAGTAGAGGTGGAGATCCATGCCGGCGGTCTCAACCTAGAGCCGTTTCTA
AAGCGCGTCGATGCGGACGCCGACCCGCGGCAGTATGCTGACACGGTCAAGGCTCTCCGCGTGCGGCGGC
TCACAGTGGGAGCCGCACAGGTTCCTGCTCAGCTACTGGTAGGCGCCCTGCGTGTGCTAGCGTACTCCCG
CCTCAAGGAACTGACGCTCGAGGACCTAAAGATAACCGGCACCATGCCTCCGCTGCCTCTGGAAGCCACA
GGACTTGCACTTTCCAGCTTGCGCCTACGCAACGTGTCGTGGGCGACAGGGCGTTCTTGGCTCGCCGAGC
TGCAGCAGTGGCTCAAGCCAGGCCTCAAGGTACTGAGCATTGCCCAAGCACACTCGCCTGCCTTTTCCTG
CGAACAGGTTCGCGCCTTCCCGGCCCTTACCAGCCTAGACCTGTCTGACAATCCTGGACTGGGCGAACGC
GGACTGATGGCGGCTCTCTGTCCCCACAAGTTCCCGGCCATCCAGAATCTAGCGCTGCGCAACACAGGAA
TGGAGACGCCCACAGGCGTGTGCGCCGCACTGGCGGCGGCAGGTGTGCAGCCCCACAGCCTAGACCTCAG
CCACAACTCGCTGCGCGCCACCGTAAACCCTAGCGCTCCGAGATGCATGTGGTCCAGCGCCCTGAACTCC
CTCAATCTGTCGTTCGCTGGGCTGGAACAGGTGCCTAAAGGACTGCCAGCCAAGCTCAGAGTGCTCGATC
TCAGCTGCAACAGACTGAACAGGGCGCCGCAGCCTGACGAGCTGCCCGAGGTGGATAACCTGACACTGGA
CGGGAATCCCTTCCTGGTCCCTGGAACTGCCCTCCCCCACGAGGGCTCAATGAACTCCGGCGTGGTCCCA
GCCTGTGCACGTTCGACCCTGTCGGTGGGGGTGTCGGGAACCCTGGTGCTGCTCCAAGGGGCCCGGGGCT
TTGCCTAA

Translation (375 aa):
MERASCLLLLLLPLVHVSATTPEPCELDDEDFRCVCNFSEPQPDWSEAFQCVSAVEVEIHAGGLNLEPFL
KRVDADADPRQYADTVKALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEAT
GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER
GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNS
LNLSFAGLEQVPKGLPAKLRVLDLSCNRLNRAPQPDELPEVDNLTLDGNPFLVPGTALPHEGSMNSGVVP
ACARSTLSVGVSGTLVLLQGARGFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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