NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8853.1 Public Homo sapiens 12 PFDN5 24 110 108 CCDS HistoryNCBI Gene:5204Re-query CCDS DB by CCDS ID:8853.1Re-query CCDS DB by GeneID:5204See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8853.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334478.9 ENSP00000334188.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334478.9Link to Ensembl Protein Viewer:ENSP00000334188.4Re-query CCDS DB by Nucleotide ID:ENST00000334478Re-query CCDS DB by Protein ID:ENSP00000334188
Original member Current member EBI ENST00000551018.5 ENSP00000447942.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000551018.5Link to Ensembl Protein Viewer:ENSP00000447942.1Re-query CCDS DB by Nucleotide ID:ENST00000551018Re-query CCDS DB by Protein ID:ENSP00000447942
Original member Current member NCBI NM_002624.4 NP_002615.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002624.4Link to Protein Sequence:NP_002615.2Re-query CCDS DB by Nucleotide ID:NM_002624Re-query CCDS DB by Protein ID:NP_002615Link to BLAST:NP_002615.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002615.2 154 Q99471-1 154 100% 0 0

Chromosomal Locations for CCDS 8853.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 53295568 53295639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53295839 53295941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53296244 53296275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53297850 53297924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53298045 53298150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 53299269 53299345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGGCGCAGTCTATTAACATCACGGAGCTGAATCTGCCGCAGCTAGAAATGCTCAAGAACCAGCTGGACC
AGGAAGTGGAGTTCTTGTCCACGTCCATTGCTCAGCTCAAAGTGGTACAGACCAAGTATGTGGAAGCCAA
GGACTGTCTGAACGTGCTGAACAAGAGCAACGAGGGGAAAGAATTACTCGTCCCACTGACGAGTTCTATG
TATGTCCCTGGGAAGCTGCATGATGTGGAACACGTGCTCATCGATGTGGGAACTGGGTACTATGTAGAGA
AGACAGCTGAGGATGCCAAGGACTTCTTCAAGAGGAAGATAGATTTTCTAACCAAGCAGATGGAGAAAAT
CCAACCAGCTCTTCAGGAGAAGCACGCCATGAAACAGGCCGTCATGGAAATGATGAGTCAGAAGATTCAG
CAGCTCACAGCCCTGGGGGCAGCTCAGGCTACTGCTAAGGCCTGA

Translation (154 aa):
MAQSINITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSM
YVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDFFKRKIDFLTKQMEKIQPALQEKHAMKQAVMEMMSQKIQ
QLTALGAAQATAKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH