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Report for CCDS34545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34545.1 Public Homo sapiens 6 TXLNB 24 110 108 CCDS HistoryNCBI Gene:167838Re-query CCDS DB by CCDS ID:34545.1Re-query CCDS DB by GeneID:167838See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34545.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358430.8 ENSP00000351206.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358430.8Link to Ensembl Protein Viewer:ENSP00000351206.3Re-query CCDS DB by Nucleotide ID:ENST00000358430Re-query CCDS DB by Protein ID:ENSP00000351206
Original member Current member NCBI NM_153235.4 NP_694967.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153235.4Link to Protein Sequence:NP_694967.3Re-query CCDS DB by Nucleotide ID:NM_153235Re-query CCDS DB by Protein ID:NP_694967Link to BLAST:NP_694967.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694967.3 684 Q8N3L3 684 100% 0 0

Chromosomal Locations for CCDS 34545.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 139242526 139243314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139244595 139244690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139247817 139247909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139255564 139255638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139260318 139260437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139262579 139262773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139270456 139270626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139276830 139276921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139288476 139288899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGGAGGCTAATCACTCTGAACAGCTCTCAGCGGAACGACAGTCAACACCTCCAGGTGACAGTTCATCAT
TACCCAGTCACAATGGCCTGGAGAAGGAAGATGGCCAGGATTCTCCAACCCCAGTCCAACCACCAGAGAA
AGAGGCAAGTGTGCACCCCGATATCTCTGAAGAGCTGAATCGACAGCTGGAAGACATCATTAACACTTAT
GGGTCTGCTGCCAGCACAGCAGGGAAAGAGGGCTCTGCCAGGGCCAGTGAGCAGCCTGAGAATGCAGAAT
CACCTGACAACGAGGATGGGGACTGTGAGGAAACAACTGAAGAGGCTGGAAGAGAACCCGTTGCTTCTGG
AGAGCCACCCACTGTCAAAGAGCCCGTCAGCAATAAGGAGCAAAAATTGGAAAAGAAAATCCTAAAAGGA
TTAGGCAAAGAAGCCAACCTGCTAATGCAAAATCTGAACAAGTTGCAAACACCGGAAGAAAAGTTTGATT
TTTTATTCAAGAAGTATGCTGAATTGCTGGATGAACATCGTACTGAGCAAAAGAAGTTAAAGCTCCTCCA
AAAGAAACAGGTACAAATTCAAAAAGAAAAGGACCAGTTACAAGGTGAACACAGCAGAGCTATCCTCGCT
CGAAGCAAATTGGAGAGTCTGTGCCGGGAGCTGCAGAGACACAACAAGACTCTGAAGGAAGAGGCGCTTC
AGCGGGCACGTGAGGAAGAAGAGAAAAGGAAGGAAATCACAAGCCATTTCCAGAGTACCCTCACGGACAT
CCAGGGCCAGATCGAGCAGCAGAGTGAGCGAAATATGAAGCTCTGTCAGGAGAACACAGAGCTTGCAGAA
AAGCTGAAAAGCATCATCGATCAGTATGAGCTCAGAGAGGAGCATCTGGACAAAATATTTAAACACAGAG
AACTGCAGCAGAAGCTGGTGGATGCAAAGCTTGAGCAGGCCCAAGAAATGATGAAGGAAGCGGAGGAGCG
ACACAAACGAGAAAAGGAATATTTGCTGAACCAGGCAGCAGAGTGGAAACTTCAGGCGAAAGTGCTGAAG
GAGCAAGAGACAGTCCTGCAGGCTCAGCTCACTCTCTACTCAGGAAGGTTTGAAGAATTCCAGAGCACAC
TAACTAAAAGCAACGAGGTGTTTGCCACGTTCAAACAGGAAATGGACAAAACAACTAAGAAAATGAAGAA
GCTGGAAAAGGACACAGCCACATGGAAAGCCCGATTTGAGAACTGTAACAAAGCTCTGTTGGACATGATT
GAAGAGAAAGCACTGAGAGCTAAAGAATATGAGTGCTTTGTGATGAAAATCGGGAGGCTAGAGAACCTCT
GCCGTGCTTTACAAGAAGAGAGAAACGAACTCCACAAAAAAATCAGAGACGCAGAAATATCTGAAAAGGA
TGACCAAAGTCAGCACAACTCCGATGAAGAGCCAGAGTCAAACGTCTCTGTGGATCAAGAGATTGACGCA
GAGGAGGTTAATAGTGTCCAAACCGCCGTGAAAAATCTGGCCACAGCCTTCATGATAATTCATCATCCAG
AGTCAACCCCGCACCAGTCCAAAGAAACCCAACCCGAAATAGGCAGTTCTCAGGAGAGTGCTGACGCCGC
TCTCAAGGAGCCAGAGCAACCCCCTCTGATCCCTTCACGGGATTCAGAGAGTCCCCTGCCTCCCCTAACT
CCTCAGGCTGAAGCCGAAGGAGGCAGTGATGCTGAACCTCCCTCCAAGGCCAGTAATTCTCCTGCCGGGT
TGGGAGCAGAAACCCAATGCGAGGGTCTCCCTGTTGGAGCACAGGCTGATCAGGCGTCCTGGAAGCCAGA
GGCAGAAGCTTCCGGTCAGGCCCCACAGGCTCCCACCGAGGCCTCCCTACAGAAGATGGAGGCAGATGTG
CCTGCTCCAGCATGCGCAGCAGAAGAGCACGTTGCAGCCATGGTGCCTGCATGCGAGCCCAGTAGGCAGC
CCCCACGAGCAGCAGCAGAGGAGCTGCCAGTAGGGGCCTCAGCTGGGCCCCAGCCGCGCAACGTGGCTGA
CACCAATCTGGAAGGCGTCGACTAA

Translation (684 aa):
MEANHSEQLSAERQSTPPGDSSSLPSHNGLEKEDGQDSPTPVQPPEKEASVHPDISEELNRQLEDIINTY
GSAASTAGKEGSARASEQPENAESPDNEDGDCEETTEEAGREPVASGEPPTVKEPVSNKEQKLEKKILKG
LGKEANLLMQNLNKLQTPEEKFDFLFKKYAELLDEHRTEQKKLKLLQKKQVQIQKEKDQLQGEHSRAILA
RSKLESLCRELQRHNKTLKEEALQRAREEEEKRKEITSHFQSTLTDIQGQIEQQSERNMKLCQENTELAE
KLKSIIDQYELREEHLDKIFKHRELQQKLVDAKLEQAQEMMKEAEERHKREKEYLLNQAAEWKLQAKVLK
EQETVLQAQLTLYSGRFEEFQSTLTKSNEVFATFKQEMDKTTKKMKKLEKDTATWKARFENCNKALLDMI
EEKALRAKEYECFVMKIGRLENLCRALQEERNELHKKIRDAEISEKDDQSQHNSDEEPESNVSVDQEIDA
EEVNSVQTAVKNLATAFMIIHHPESTPHQSKETQPEIGSSQESADAALKEPEQPPLIPSRDSESPLPPLT
PQAEAEGGSDAEPPSKASNSPAGLGAETQCEGLPVGAQADQASWKPEAEASGQAPQAPTEASLQKMEADV
PAPACAAEEHVAAMVPACEPSRQPPRAAAEELPVGASAGPQPRNVADTNLEGVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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