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Report for CCDS33851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33851.1 Public Homo sapiens 3 COPG1 24 110 108 CCDS HistoryNCBI Gene:22820Re-query CCDS DB by CCDS ID:33851.1Re-query CCDS DB by GeneID:22820See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33851.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314797.10 ENSP00000325002.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314797.10Link to Ensembl Protein Viewer:ENSP00000325002.6Re-query CCDS DB by Nucleotide ID:ENST00000314797Re-query CCDS DB by Protein ID:ENSP00000325002
Original member Current member NCBI NM_016128.4 NP_057212.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016128.4Link to Protein Sequence:NP_057212.1Re-query CCDS DB by Nucleotide ID:NM_016128Re-query CCDS DB by Protein ID:NP_057212Link to BLAST:NP_057212.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057212.1 874 Q9Y678 874 100% 0 0

Chromosomal Locations for CCDS 33851.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129249710 129249746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129250682 129250734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129252281 129252361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129252623 129252694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129252876 129252955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129254668 129254743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129254985 129255077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129256068 129256154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129257470 129257627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129257727 129257860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129260333 129260400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129260619 129260807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129263904 129263999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129265549 129265792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129267024 129267099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129267937 129268040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129268495 129268620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129268932 129269000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129271767 129271909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129272244 129272415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129272807 129272904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129274838 129274976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129275194 129275292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129277294 129277424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2625 nt):
ATGTTGAAGAAATTCGACAAGAAGGATGAGGAGTCAGGTGGAGGCTCCAACCCATTCCAGCACCTTGAGA
AGAGTGCGGTACTCCAGGAGGCCCGTGTATTTAATGAAACTCCCATCAACCCTCGGAAATGTGCCCACAT
CCTCACCAAGATTCTTTATCTCATAAACCAGGGGGAGCACCTGGGGACCACGGAAGCGACCGAGGCCTTC
TTTGCCATGACCAAGCTCTTTCAGTCCAATGATCCCACACTCCGTCGGATGTGCTACTTGACCATCAAGG
AGATGTCTTGCATTGCAGAGGATGTCATCATTGTCACCAGCAGCCTAACAAAAGACATGACTGGGAAAGA
AGACAACTACCGGGGCCCGGCCGTGCGAGCCCTCTGCCAGATCACTGATAGCACCATGCTGCAGGCTATT
GAGCGCTACATGAAACAAGCCATTGTGGACAAGGTGCCCAGTGTCTCCAGCTCTGCCCTCGTGTCTTCCT
TGCACCTGCTGAAGTGCAGCTTTGACGTGGTCAAGCGCTGGGTGAATGAGGCTCAGGAGGCAGCATCCAG
TGATAACATCATGGTCCAGTACCACGCACTAGGGCTCCTGTACCATGTGCGTAAGAATGACCGCCTAGCC
GTCAATAAGATGATCAGCAAGGTCACACGGCATGGCCTTAAGTCTCCCTTTGCCTACTGCATGATGATCC
GGGTGGCCAGCAAGCAGCTGGAAGAGGAGGATGGCAGCCGTGACAGCCCACTGTTTGACTTCATCGAGAG
CTGCTTGCGCAACAAGCACGAGATGGTGGTGTATGAAGCCGCCTCGGCCATCGTCAATCTGCCAGGCTGC
AGTGCCAAAGAGCTGGCCCCGGCTGTGTCAGTGCTCCAGCTTTTCTGCAGCTCACCCAAGGCTGCTCTCC
GCTATGCTGCTGTTCGTACCCTCAATAAGGTTGCCATGAAGCATCCGTCAGCTGTGACAGCTTGTAATCT
GGATCTGGAGAACCTGGTCACAGATTCAAACCGCAGCATTGCCACGCTGGCCATCACCACCCTCCTTAAG
ACGGGCAGCGAGAGCAGCATCGACCGCCTCATGAAGCAGATCTCCTCCTTCATGTCAGAAATCTCGGATG
AATTCAAGGTGGTGGTTGTCCAGGCCATCAGTGCCCTGTGTCAGAAATATCCTCGCAAACACGCCGTCCT
TATGAACTTCCTGTTCACCATGCTGCGGGAAGAGGGTGGCTTTGAGTATAAGCGCGCTATCGTGGACTGC
ATCATCAGCATCATTGAAGAGAACTCAGAGAGCAAGGAGACAGGGCTGTCACATCTGTGCGAGTTCATCG
AGGACTGCGAGTTCACAGTGCTGGCCACCCGTATTCTACATCTCCTGGGCCAGGAGGGGCCCAAGACCAC
CAATCCCTCAAAGTACATCCGCTTCATCTATAACCGAGTGGTCTTGGAGCATGAGGAGGTCCGGGCAGGT
GCTGTGAGTGCTCTGGCGAAGTTTGGAGCCCAGAATGAAGAGATGTTACCCAGTATCTTGGTGTTGCTGA
AGAGGTGTGTGATGGATGATGACAATGAAGTAAGGGACCGAGCCACCTTCTACCTAAATGTCCTGGAGCA
GAAGCAGAAGGCCCTTAATGCAGGCTATATCCTAAATGGTCTGACTGTGTCCATCCCTGGTCTGGAGAGG
GCTCTGCAGCAGTACACTCTAGAACCATCAGAAAAACCTTTTGACCTCAAGTCTGTGCCCCTGGCCACGG
CGCCCATGGCAGAGCAGAGAACAGAAAGTACCCCCATCACAGCAGTCAAACAGCCTGAGAAAGTGGCAGC
TACCAGGCAGGAGATCTTCCAGGAGCAGTTGGCAGCAGTGCCAGAGTTCCGCGGTCTTGGGCCCCTCTTC
AAGTCCTCGCCTGAGCCCGTGGCCCTCACCGAGTCAGAGACGGAGTATGTCATCCGCTGCACCAAACACA
CCTTCACCAACCACATGGTTTTTCAGTTTGACTGCACAAACACACTCAATGACCAGACCTTGGAGAATGT
CACAGTGCAGATGGAGCCCACTGAGGCCTATGAGGTGCTCTGTTACGTGCCTGCCCGGAGCCTGCCCTAC
AACCAGCCCGGGACCTGCTACACACTGGTGGCACTGCCCAAAGAAGACCCCACAGCTGTGGCCTGCACAT
TCAGCTGCATGATGAAGTTCACTGTCAAGGACTGTGATCCCACCACTGGGGAGACTGATGACGAAGGCTA
TGAGGATGAGTATGTGCTGGAAGATCTGGAAGTTACTGTAGCTGATCACATTCAAAAGGTCATGAAACTG
AACTTCGAAGCAGCCTGGGATGAGGTAGGGGATGAATTTGAGAAGGAGGAAACGTTCACCTTGTCTACCA
TCAAGACACTTGAAGAGGCTGTGGGTAATATTGTGAAGTTCTTGGGAATGCACCCTTGTGAGAGGTCAGA
CAAAGTGCCGGATAACAAGAACACCCACACGTTGCTCCTGGCTGGTGTGTTCCGGGGTGGTCATGACATC
CTGGTGCGCTCCCGGCTGCTGCTTTTGGACACAGTGACAATGCAGGTGACAGCCAGAAGTTTGGAGGAGC
TGCCAGTAGACATCATCTTGGCATCTGTGGGATAA

Translation (874 aa):
MLKKFDKKDEESGGGSNPFQHLEKSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAF
FAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPAVRALCQITDSTMLQAI
ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA
VNKMISKVTRHGLKSPFAYCMMIRVASKQLEEEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC
SAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDSNRSIATLAITTLLK
TGSESSIDRLMKQISSFMSEISDEFKVVVVQAISALCQKYPRKHAVLMNFLFTMLREEGGFEYKRAIVDC
IISIIEENSESKETGLSHLCEFIEDCEFTVLATRILHLLGQEGPKTTNPSKYIRFIYNRVVLEHEEVRAG
AVSALAKFGAQNEEMLPSILVLLKRCVMDDDNEVRDRATFYLNVLEQKQKALNAGYILNGLTVSIPGLER
ALQQYTLEPSEKPFDLKSVPLATAPMAEQRTESTPITAVKQPEKVAATRQEIFQEQLAAVPEFRGLGPLF
KSSPEPVALTESETEYVIRCTKHTFTNHMVFQFDCTNTLNDQTLENVTVQMEPTEAYEVLCYVPARSLPY
NQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKDCDPTTGETDDEGYEDEYVLEDLEVTVADHIQKVMKL
NFEAAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDI
LVRSRLLLLDTVTMQVTARSLEELPVDIILASVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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