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Report for CCDS45660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45660.1 Public Homo sapiens 17 SRCIN1 24 110 108 CCDS HistoryNCBI Gene:80725Re-query CCDS DB by CCDS ID:45660.1Re-query CCDS DB by GeneID:80725See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45660.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000617146.5 ENSP00000484715.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000617146.5Link to Ensembl Protein Viewer:ENSP00000484715.1Re-query CCDS DB by Nucleotide ID:ENST00000617146Re-query CCDS DB by Protein ID:ENSP00000484715
Original member Current member NCBI NM_025248.3 NP_079524.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025248.3Link to Protein Sequence:NP_079524.2Re-query CCDS DB by Nucleotide ID:NM_025248Re-query CCDS DB by Protein ID:NP_079524Link to BLAST:NP_079524.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079524.2 1183 Q9C0H9-5 1183 100% 0 0

Chromosomal Locations for CCDS 45660.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 38533297 38533431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38543823 38543969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38548557 38548709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38549056 38549210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38551155 38551389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38551886 38552132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38552447 38552594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38552725 38552855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38558227 38558402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38559585 38559772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38560054 38560097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38560333 38560425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38561463 38562328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38562827 38562920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38563323 38563521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38564118 38564313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38568211 38568231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38578490 38578791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 38605684 38605705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3552 nt):
ATGGGGAACGCTCCGTCCCAAGATCCGGAGCGGAGCAGCCCCCCCATGCTGTCTGCGGACGATGCGGAGT
ACCCGCGGGAGTACCGGACCCTGGGGGGCGGGGGCGGCGGGGGCAGCGGGGGCCGGCGCTTCTCCAACGT
GGGGCTGGTGCACACGTCCGAGCGGCGGCACACGGTGATCGCGGCCCAGAGTCTGGAGGCGCTCAGCGGG
CTCCAGAAGGCGGACGCCGACCGCAAGCGTGATGCCTTCATGGACCACCTGAAGAGCAAGTACCCACAGC
ACGCCCTGGCCCTGCGAGGCCAGCAGGACAGGATGCGAGAGCAGCCAAACTACTGGAGTTTCAAGACCCG
CAGCTCACGCCACACTCAGGGAGCCCAGCCCGGGCTGGCAGACCAGGCGGCAAAGCTGTCCTACGCCTCC
GCCGAGTCGCTGGAGACCATGTCGGAGGCCGAGCTGCCCCTGGGCTTCAGCAGGATGAACCGCTTCCGAC
AGAGCCTGCCTCTCTCCCGCTCGGCCAGCCAGACCAAGCTGCGCTCCCCAGGGGTGCTGTTCCTGCAGTT
CGGGGAGGAGACTCGGCGCGTGCACATCACGCACGAGGTCAGCAGCCTGGACACGCTGCACGCACTCATC
GCGCACATGTTCCCGCAGAAGCTCACCATGGGCATGCTTAAGTCGCCCAATACCGCCATCCTCATCAAAG
ACGAGGCTCGCAACGTCTTCTACGAGCTGGAGGACGTCCGGGACATCCAGGACCGCAGTATTATCAAGAT
CTACAGAAAGGAGCCCCTCTACGCTGCCTTCCCTGGCTCACATCTCACCAACGGGGACCTCCGGAGAGAG
ATGGTGTACGCATCGCGGGAGTCCTCGCCCACGCGGCGCCTCAACAACCTGTCACCAGCGCCGCACCTGG
CATCCGGCTCGCCGCCGCCCGGGCTGCCGTCGGGGCTGCCGTCCGGGCTGCAGTCCGGTTCGCCGTCGCG
TTCGCGCCTATCGTACGCCGGGGGGCGCCCGCCTTCGTACGCCGGCAGCCCGGTGCACCACGCGGCCGAG
AGGCTGGGAGGCGCCCCGGCCGCCCAGGGCGTCAGCCCCAGCCCCAGCGCCATCCTGGAGCGGCGCGACG
TGAAGCCGGACGAGGACCTGGCGAGCAAGGCGGGCGGCATGGTGCTGGTGAAAGGCGAGGGCCTCTATGC
TGACCCCTACGGGCTGCTGCACGAGGGCCGTCTGAGCCTGGCCGCGGCCGCCGGCGACCCGTTCGCCTAC
CCGGGCGCCGGCGGCCTCTACAAGCGCGGCTCGGTGCGCTCGCTCAGCACCTACTCGGCCGCCGCGCTGC
AGTCCGATCTGGAGGACTCCCTGTACAAGGCGGCGGGCGGCGGCGGCCCGCTGTACGGCGACGGCTACGG
CTTCCGCCTGCCGCCTTCGTCACCGCAGAAGCTGGCCGACGTGGCAGCACCCCCCGGAGGTCCCCCGCCA
CCGCACAGCCCCTACTCGGGGCCGCCCAGCCGCGGCTCGCCAGTGCGCCAGTCCTTCCGCAAGGACTCGG
GCTCCTCGTCCGTCTTTGCCGAGAGTCCTGGAGGGAAGACCCGCAGCGCGGGGAGCGCCTCGACGGCCGG
AGCTCCCCCTTCGGAGCTCTTCCCTGGGCCTGGGGAACGCTCGCTGGTTGGGTTCGGGCCGCCAGTGCCA
GCCAAGGACACGGAGACCAGGGAGCGCATGGAGGCCATGGAGAAGCAGATTGCCAGCCTCACAGGCCTGG
TGCAGAGCGCCTTACTGCGAGGCTCTGAGCCTGAGACCCCCAGCGAGAAGATTGAAGGCTCCAATGGAGC
AGCCACCCCCTCAGCACCCTGTGGGTCAGGCGGCCGGAGCAGCGGGGCCACCCCGGTGTCCGGCCCGCCC
CCGCCCTCGGCCAGCAGCACCCCCGCAGGTCAGCCTACCGCCGTTAGCCGGCTGCAGATGCAGCTTCACC
TGCGAGGCCTGCAGAACAGCGCCAGTGACTTGCGCGGCCAGCTCCAGCAGTTGCGCAAGCTCCAGCTACA
GAACCAGGAGTCGGTGCGCGCGCTGCTGAAGCGCACGGAGGCAGAGCTGAGCATGCGCGTGTCGGAGGCG
GCGCGGCGGCAGGAGGACCCGCTGCAGCGGCAGCGCACCCTGGTGGAAGAGGAACGGCTGCGCTATCTCA
ACGACGAGGAGCTTATTACCCAGCAGCTCAATGACCTGGAGAAATCGGTGGAGAAGATCCAGAGAGACGT
GTCCCACAACCACCGGCTGGTGCCCGGCCCTGAGCTGGAGGAGAAGGCACTGGTGCTGAAGCAGCTCGGG
GAGACGCTGACAGAGCTCAAGGCTCACTTCCCGGGCCTGCAGAGCAAGATGCGGGTGGTGCTGCGCGTGG
AGGTGGAGGCGGTGAAGTTCCTGAAGGAGGAGCCCCAGCGCCTGGATGGGCTCCTCAAGCGCTGCCGCGG
GGTCACGGACACGCTGGCCCAGATCCGAAGGCAAGTGGATGAGGGTGTGTGGCCACCCCCCAACAATCTC
CTGAGTCAGTCCCCCAAGAAGGTGACGGCAGAGACTGACTTCAACAAGAGCGTGGACTTCGAAATGCCAC
CCCCCAGCCCCCCGCTGAACCTGCATGAGCTGAGCGGGCCAGCTGAAGGAGCCTCTCTTACCCCCAAGGG
GGGCAACCCCACCAAAGGCCTGGACACTCCTGGCAAGAGAAGCGTGGACAAAGCTGTGTCTGTTGAGGCT
GCAGAGCGAGACTGGGAGGAGAAGCGGGCAGCCCTGACCCAGTACAGTGCCAAGGACATCAACCGGCTGC
TGGAAGAGACACAGGCAGAGCTGCTCAAGGCCATCCCTGACCTGGACTGTGCCAGCAAGGCCCATCCAGG
CCCGGCCCCCACTCCAGATCACAAGCCCCCCAAGGCCCCCCACGGCCAGAAGGCAGCCCCCCGAACGGAG
CCCAGTGGGAGGAGGGGCTCAGATGAGTTGACCGTGCCCCGATACCGCACAGAGAAGCCCTCCAAGTCGC
CCCCACCGCCCCCTCCCCGCCGGAGCTTCCCCTCCTCCCATGGCCTGACCACCACACGTACCGGAGAGGT
GGTGGTCACCAGCAAGAAGGACTCGGCCTTCATCAAGAAGGCTGAGTCCGAGGAGCTGGAGGTGCAGAAG
CCCCAGGTGAAGCTGCGCCGGGCTGTGTCTGAGGTGGCCCGCCCAGCCTCCACACCACCCATCATGGCCT
CGGCCATCAAGGACGAGGATGACGAGGATCGCATCATCGCAGAGCTAGAGAGTGGCGGAGGCAGTGTACC
ACCCATGAAGGTGGTGACTCCGGGGGCCTCTCGGCTGAAGGCGGCCCAGGGCCAGGCGGGCAGCCCCGAC
AAAAGCAAACATGGCAAGCAGAGGGCCGAGTACATGCGGATCCAGGCCCAGCAGCAGGCCACTAAACCAT
CTAAAGAGATGAGCGGGTCGAATGAGACCTCGAGCCCAGTCTCAGAAAAGCCCTCGGCTTCCAGAACCTC
TATCCCTGTATTGACTTCCTTTGGGGCAAGGAATTCTTCCATCTCCTTCTAG

Translation (1183 aa):
MGNAPSQDPERSSPPMLSADDAEYPREYRTLGGGGGGGSGGRRFSNVGLVHTSERRHTVIAAQSLEALSG
LQKADADRKRDAFMDHLKSKYPQHALALRGQQDRMREQPNYWSFKTRSSRHTQGAQPGLADQAAKLSYAS
AESLETMSEAELPLGFSRMNRFRQSLPLSRSASQTKLRSPGVLFLQFGEETRRVHITHEVSSLDTLHALI
AHMFPQKLTMGMLKSPNTAILIKDEARNVFYELEDVRDIQDRSIIKIYRKEPLYAAFPGSHLTNGDLRRE
MVYASRESSPTRRLNNLSPAPHLASGSPPPGLPSGLPSGLQSGSPSRSRLSYAGGRPPSYAGSPVHHAAE
RLGGAPAAQGVSPSPSAILERRDVKPDEDLASKAGGMVLVKGEGLYADPYGLLHEGRLSLAAAAGDPFAY
PGAGGLYKRGSVRSLSTYSAAALQSDLEDSLYKAAGGGGPLYGDGYGFRLPPSSPQKLADVAAPPGGPPP
PHSPYSGPPSRGSPVRQSFRKDSGSSSVFAESPGGKTRSAGSASTAGAPPSELFPGPGERSLVGFGPPVP
AKDTETRERMEAMEKQIASLTGLVQSALLRGSEPETPSEKIEGSNGAATPSAPCGSGGRSSGATPVSGPP
PPSASSTPAGQPTAVSRLQMQLHLRGLQNSASDLRGQLQQLRKLQLQNQESVRALLKRTEAELSMRVSEA
ARRQEDPLQRQRTLVEEERLRYLNDEELITQQLNDLEKSVEKIQRDVSHNHRLVPGPELEEKALVLKQLG
ETLTELKAHFPGLQSKMRVVLRVEVEAVKFLKEEPQRLDGLLKRCRGVTDTLAQIRRQVDEGVWPPPNNL
LSQSPKKVTAETDFNKSVDFEMPPPSPPLNLHELSGPAEGASLTPKGGNPTKGLDTPGKRSVDKAVSVEA
AERDWEEKRAALTQYSAKDINRLLEETQAELLKAIPDLDCASKAHPGPAPTPDHKPPKAPHGQKAAPRTE
PSGRRGSDELTVPRYRTEKPSKSPPPPPPRRSFPSSHGLTTTRTGEVVVTSKKDSAFIKKAESEELEVQK
PQVKLRRAVSEVARPASTPPIMASAIKDEDDEDRIIAELESGGGSVPPMKVVTPGASRLKAAQGQAGSPD
KSKHGKQRAEYMRIQAQQQATKPSKEMSGSNETSSPVSEKPSASRTSIPVLTSFGARNSSISF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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