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Report for CCDS13625.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13625.1 Public Homo sapiens 21 TMEM50B 24 110 108 CCDS HistoryNCBI Gene:757Re-query CCDS DB by CCDS ID:13625.1Re-query CCDS DB by GeneID:757See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13625.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000420455.5 ENSP00000397773.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420455.5Link to Ensembl Protein Viewer:ENSP00000397773.1Re-query CCDS DB by Nucleotide ID:ENST00000420455Re-query CCDS DB by Protein ID:ENSP00000397773
Original member Current member EBI ENST00000542230.7 ENSP00000439768.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000542230.7Link to Ensembl Protein Viewer:ENSP00000439768.2Re-query CCDS DB by Nucleotide ID:ENST00000542230Re-query CCDS DB by Protein ID:ENSP00000439768
Original member Current member NCBI NM_006134.7 NP_006125.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006134.7Link to Protein Sequence:NP_006125.2Re-query CCDS DB by Nucleotide ID:NM_006134Re-query CCDS DB by Protein ID:NP_006125Link to BLAST:NP_006125.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006125.2 158 P56557 158 100% 0 0

Chromosomal Locations for CCDS 13625.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 33450818 33450863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33455727 33455784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33460413 33460505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33465342 33465409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33467010 33467122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 33468787 33468885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGCAGGCTTCCTAGATAATTTTCGTTGGCCAGAATGTGAATGTATTGACTGGAGTGAGAGAAGAAATG
CTGTGGCATCTGTTGTCGCAGGTATATTGTTTTTTACAGGCTGGTGGATAATGATTGATGCAGCTGTGGT
GTATCCTAAGCCAGAACAGTTGAACCATGCCTTTCACACATGTGGTGTATTTTCCACATTGGCTTTCTTC
ATGATAAATGCTGTATCCAATGCTCAGGTGAGAGGTGATAGCTATGAAAGCGGCTGTTTAGGAAGAACAG
GTGCTCGAGTTTGGCTTTTCATTGGTTTCATGTTGATGTTTGGGTCACTTATTGCTTCCATGTGGATTCT
TTTTGGTGCATATGTTACCCAAAATACTGATGTTTATCCGGGACTAGCTGTGTTTTTTCAAAATGCACTT
ATATTTTTTAGCACTCTGATCTACAAATTTGGAAGAACCGAAGAGCTATGGACCTGA

Translation (158 aa):
MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFF
MINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVTQNTDVYPGLAVFFQNAL
IFFSTLIYKFGRTEELWT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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