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Report for CCDS47081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47081.1 Public Homo sapiens 4 FAM47E 24 110 108 CCDS HistoryNCBI Gene:100129583Re-query CCDS DB by CCDS ID:47081.1Re-query CCDS DB by GeneID:100129583See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47081.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424749.7 ENSP00000409423.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000424749.7Link to Ensembl Protein Viewer:ENSP00000409423.2Re-query CCDS DB by Nucleotide ID:ENST00000424749Re-query CCDS DB by Protein ID:ENSP00000409423
Original member Current member NCBI NM_001136570.3 NP_001130042.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136570.3Link to Protein Sequence:NP_001130042.1Re-query CCDS DB by Nucleotide ID:NM_001136570Re-query CCDS DB by Protein ID:NP_001130042Link to BLAST:NP_001130042.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001130042.1 393 Q6ZV65-3 393 100% 0 0

Chromosomal Locations for CCDS 47081.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 76251747 76251820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76256178 76256523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76263704 76263843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76268660 76268768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76271568 76271768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76278069 76278224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76280264 76280341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76283381 76283458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGCGGACCGCAGGCGGCGGCTCCGGCCGGGGACGTTGGCCCCGGTGCGCGAGGGCGTGAACTGCAGGT
CCAGATGTTTCACAAAGCACAAGAACGGGCTGAAGTTCCCCACCTCTCTGCACAGCCGGCAGTTGGTATT
TCCAAGAAAGGGGCTGGACGACTTCAGGAAGGGCTGCCCGCCTTGCACTGGTCTGGTGACTCAGGTCCCT
GTGGAGGGCTTTCTGCCCCAGATTTATCACAGAGCTCCCCAACTGGCCCCAAAGAAGAGGCAGATCAAGC
TGCTCAAGGAAGCAGACGTGCTTTCCAAGCTCTCGCCAGCCCAGCAGGCTCGGAAGGCATTCCTGGAGGA
CGTGGAGGCCCACCTGACCCCACATCCCTTAGCGCTCTACCTGAATCTGGAAGAAGCTATGCCCATAGAG
CTCTTATCAAAGGTGCTGGAAGTGCTTGATCCTGACCGGAAGCTGGAGGACACATGGGCTTATTGTCAGG
ACACCAGGAAAGGAATGAAGGAACCCACGAAGCTTTTAAAAAAACATTCTACCCAAGTCTACCTGGGACC
TTCCAAGAAGACGTCTGTGTCAAACGCAGGCCAATGGCTTTATGAAGAAAAGCCACATAAAATGGATTTG
CTCCATGAAAATGGTCCTCGTCCTGGTCTTCATGAAAATGGAATTTCGGACATCGATGAAGAGTTCATCT
TGAAACAGTTTGACATTGACTATGAGACCAAACCAAGCCATGATGCGCTCCACACGATGAAGCTAAATCA
GGTTCCTCTGGAGCTAAAGCGTAGTGTGGGGCTCAGTAAACTGCAGGAGACAGAGTTCTTCCAGAAACTA
GGCTATGAGAGGAAACTCCAGAAACCACAGAATCCTTATAAGCCAAAGTGGGTGAAGATGAGGTATGGAG
CATGGTATTTGAACCCCAAGTTGTGGAAAAAGCAAAGAGTAGACGAGCCTCTGGTTGACCCTGAGGTCTC
ACATAAGGCTCAAGAGGAGAATTTTAAAAAGGAGCTGCAGGAACAGGAGGAGTTACTTGCAGACCTTCAC
GGAACAGTTGCCTTTAAGGATTTCATTCTAAGCAGGGGCTACAGGACGCCACGTTTCCTTGAGAATATGT
ATATCGGGAAGGAATGTAAACGTGCATGTAATAAGACTCCTATAAAACGAACTCAAGCATAG

Translation (393 aa):
MADRRRRLRPGTLAPVREGVNCRSRCFTKHKNGLKFPTSLHSRQLVFPRKGLDDFRKGCPPCTGLVTQVP
VEGFLPQIYHRAPQLAPKKRQIKLLKEADVLSKLSPAQQARKAFLEDVEAHLTPHPLALYLNLEEAMPIE
LLSKVLEVLDPDRKLEDTWAYCQDTRKGMKEPTKLLKKHSTQVYLGPSKKTSVSNAGQWLYEEKPHKMDL
LHENGPRPGLHENGISDIDEEFILKQFDIDYETKPSHDALHTMKLNQVPLELKRSVGLSKLQETEFFQKL
GYERKLQKPQNPYKPKWVKMRYGAWYLNPKLWKKQRVDEPLVDPEVSHKAQEENFKKELQEQEELLADLH
GTVAFKDFILSRGYRTPRFLENMYIGKECKRACNKTPIKRTQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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