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Report for CCDS44076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44076.1 Public Homo sapiens 1 IFFO2 24 110 108 CCDS HistoryNCBI Gene:126917Re-query CCDS DB by CCDS ID:44076.1Re-query CCDS DB by GeneID:126917See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44076.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000455833.7 ENSP00000387941.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000455833.7Link to Ensembl Protein Viewer:ENSP00000387941.2Re-query CCDS DB by Nucleotide ID:ENST00000455833Re-query CCDS DB by Protein ID:ENSP00000387941
Original member Current member NCBI NM_001136265.2 NP_001129737.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136265.2Link to Protein Sequence:NP_001129737.1Re-query CCDS DB by Nucleotide ID:NM_001136265Re-query CCDS DB by Protein ID:NP_001129737Link to BLAST:NP_001129737.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129737.1 517 Q5TF58 517 100% 0 0

Chromosomal Locations for CCDS 44076.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 18908561 18908666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18910342 18910472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18911384 18911476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18911963 18912083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18916903 18917042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18918362 18918502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18919678 18919773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18921061 18921121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 18955668 18956332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGTGAACTCGCTGCTGTTCGGGGAGATGGCCTTGGCCTTCGGCTGCCCGCCGGGCGGCGGCGGCGGGG
GCTGCCCTGGCGGGGGCGGCGGCGGCGGCGGGGCAGGGCCGGGTCCGTCGCCGGTGACGGCGGCGCTGCG
GGACGACCTGGGCTCCAACATCCACCTCTTGAAGGGGCTCAACGTGCGCTTCCGCTGCTTCCTGGCTAAG
GTGCACGAGCTGGAGCGGCGCAACCGGCTGCTGGAGAAGCAGCTGGAGCAGCAGCAGAGCGAGCGCGAGC
GGCGGCTGCGCTACAAGACCTTCTCCCGCGAGCAGGCCGTGCAGACCGGGCCCGAGTTGCTGCGGCCCCC
GGCGCCCGGCGGCGGGCACGGCCTCAGCAGTGGCGCGGCGGCCGGCGCCAACGCCAATGCCGTGGCCCTG
GGCGGCCTGCCCCCCGGCGGCGGCTCGCACCCGCAGCACTACGGCCGCCTGCCCGGGACCATCTGGAGCT
ACACGCAGGTGCGGCGCACGGGCGGCGGCGGCGTGGAGACCGTGCAGGGCCCCGGCGTGTCGTGGGTGCA
CCCCGACGGCGTGGGCGTGCAGATCGACACCATCACGCCGGAGATCCGCGCGCTCTACAACGTGCTGGCC
AAGGTGAAGCGCGAGCGCGACGAGTATAAGCGGAGGTGGGAGGAGGAGCTCGCCAAGCGCATGAACCTTC
AGACCATGGTGGACACGCTGCAGGAGGCAGCACAGGAGGCTGATGCCATCCAGGAGGAGATGAATGAGAA
GATCGAGCGGCTCAAGGCCGAGCTGGTGGTGTTTAAGGGGCTTATGAGTGACCCCATGACAGACCTGGAC
ACAAAGATCCAAGAAAAGGCCATGAAGGTGGACATGGACATCTGCCGCCGAATCGATATCACGGCCAAGC
TGTGCGATGTCGCACAGCAGCGGAACTCAGAAGACGTGTCCAAGATCTTCCAGGTGGTCCCCAAAAAGAA
AGAGCGTAAGGTGGCTTCCGATGATGACATCTCTGAGCAGGACGGGGAGGTGAACCGGTTCTCGGACGAT
GAGGTCGGCTCCATGAACATCACCGATGAGATGAAGCGCATGTTTAACCAGCTGCGGGAGACCTTTGACT
TTGACGACGACTGTGACAGCCTGACGTGGGAAGAGAATGAAGACACGCTGCTGCTCTGGGAGGATTTCAC
CAACTGCAATCCGACCATCGACCTGCAGGGCGAGCAAGAGGAAAACTTGGGCAACTTGATCCATGAGACC
GAATCCTTCTTCAAGACGAGAGACAAGGAGTACCAGGAAACGATAGGTCAGATCGAGCTCGAGCTGGCCA
CAGCCAAAAGTGACATGAACCGACACCTGCACGAGTACATGGAGATGTGCAGCATGAAGCGAGGCCTGGA
CGTGCAGATGGAGACCTGCCGCCGGCTCATCAAAGGCTCCGCAGACAGGAATTCACCGTCCCCCAGCTCC
GTGGCCAGCAGCGACTCAGGAAGTACAGATGAGATCCAGGATGAGTTCGAGCGCGAGGCGGATGTGGAGC
CCATGGTCAGCTGA

Translation (517 aa):
MVNSLLFGEMALAFGCPPGGGGGGCPGGGGGGGGAGPGPSPVTAALRDDLGSNIHLLKGLNVRFRCFLAK
VHELERRNRLLEKQLEQQQSERERRLRYKTFSREQAVQTGPELLRPPAPGGGHGLSSGAAAGANANAVAL
GGLPPGGGSHPQHYGRLPGTIWSYTQVRRTGGGGVETVQGPGVSWVHPDGVGVQIDTITPEIRALYNVLA
KVKRERDEYKRRWEEELAKRMNLQTMVDTLQEAAQEADAIQEEMNEKIERLKAELVVFKGLMSDPMTDLD
TKIQEKAMKVDMDICRRIDITAKLCDVAQQRNSEDVSKIFQVVPKKKERKVASDDDISEQDGEVNRFSDD
EVGSMNITDEMKRMFNQLRETFDFDDDCDSLTWEENEDTLLLWEDFTNCNPTIDLQGEQEENLGNLIHET
ESFFKTRDKEYQETIGQIELELATAKSDMNRHLHEYMEMCSMKRGLDVQMETCRRLIKGSADRNSPSPSS
VASSDSGSTDEIQDEFEREADVEPMVS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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