NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3803.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3803.1 Public Homo sapiens 4 NAF1 24 110 108 CCDS HistoryNCBI Gene:92345Re-query CCDS DB by CCDS ID:3803.1Re-query CCDS DB by GeneID:92345See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3803.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274054.3 ENSP00000274054.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274054.3Link to Ensembl Protein Viewer:ENSP00000274054.2Re-query CCDS DB by Nucleotide ID:ENST00000274054Re-query CCDS DB by Protein ID:ENSP00000274054
Original member Current member NCBI NM_138386.3 NP_612395.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138386.3Link to Protein Sequence:NP_612395.2Re-query CCDS DB by Nucleotide ID:NM_138386Re-query CCDS DB by Protein ID:NP_612395Link to BLAST:NP_612395.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612395.2 494 Q96HR8-1 494 100% 0 0

Chromosomal Locations for CCDS 3803.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 163128897 163129348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163133154 163133256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163137199 163137250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163140223 163140383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163145782 163145864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163148341 163148434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163164217 163164391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163166363 163166727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGGAGGTAGTGGAGGCCGCCGCCGCTCAGCTGGAAACTCTGAAATTCAATGGCACCGACTTTGGAGTTG
GGGAAGGTCCGGCGGCTCCGTCTCCGGGCTCTGCCCCTGTGCCAGGGACACAGCCGCCGCTACAGTCGTT
TGAGGGGTCCCCGGACGCTGGGCAGACCGTGGAGGTTAAGCCTGCCGGGGAGCAGCCTCTGCAGCCCGTT
CTGAACGCCGTCGCGGCCGGGACCCCGGCGCCGCAGCCACAGCCACCGGCTGAATCGCCGGCCTGCGGAG
ACTGCGTCACCTCCCCAGGAGCCGCAGAGCCTGCGCGGGCGCCGGACTCCTTGGAGACCTCGGACTCGGA
TTCGGACTCGGACAGTGAAACAGATTCAGATAGTTCAAGTTCATCGTCTTCCTCTTCATCTTCCTCATCG
TCGTCTTCTTCCTCTTGTATATCACTTCCTCCAGTGCTGTCAGATGGAGATGATGATTTACAAATTGAGA
AGGAAAATAAGAATTTTCCTCTTAAAACAAAAGATGAATTACTTCTTAATGAACTGCCTTCTGTTGAAGA
ACTCACTATTATTCTGCCTGAAGATATTGAGTTAAAGCCTCTTGGGATGGTTTCAAGTATTATTGAACAA
CTAGTAATAATTGAATCTATGACTAACCTACCTCCAGTTAATGAGGAGACTGTAATTTTTAAAAGTGATC
GACAAGCAGCAGGAAAGATATTCGAGATATTTGGACCTGTTGCACATCCATTTTATGTGTTACGGTTTAA
TTCTTCAGATCACATTGAGAGTAAAGGTATTAAAATAAAGGAGACTATGTATTTTGCTCCATCAATGAAA
GATTTCACTCAATATATATTCACAGAAAAACTAAAACAGGATAAGGGATCAGATGCATCATGGAAGAATG
ATCAGGAACCACCACCAGAGGCCTTAGATTTTAGTGATGATGAAAAAGAGAAGGAAGCCAAACAGAGGAA
AAAATCTCAGATTCAAGGCCGGAAAAAACTCAAATCTGAATTTAATGAGCCTGGTGAAGATTTTACTGAA
GTACATCAGAATTGGAATGCTCATAGCTCTGCTTCAGAGCATGCAAAAGGATATCGTAACAGAGAATTCA
CACGAGGATTTTCCAGGGCCAGATACCCTCGATCTTGCCATGGCAGGCCTCCACCTCAGCATTTCTATAA
CTCAGAACATATGGTATCTCAGGAGACTTCAGGATTTCCTTCTCAGAGACAAAATAATCCCATTATGCCA
CAATACCCCTTTCCTCTTCCAGTGTTTGACATGCATAATTTTCCCCTCCGCCCTCCACCCCCACCACCAC
CCCCACCTGTAAACATGGGTTGGGCTACACCAAACATGGCTGCTCATCCATTACTTAACTTACCATACTC
CCTACCCCCACCCCCTCCCCCTCCACCACTGCCTCCTCCACCCTCTTCTGGAGATAGTAATTCTCATTTT
GGACCTTACTATTAG

Translation (494 aa):
MEVVEAAAAQLETLKFNGTDFGVGEGPAAPSPGSAPVPGTQPPLQSFEGSPDAGQTVEVKPAGEQPLQPV
LNAVAAGTPAPQPQPPAESPACGDCVTSPGAAEPARAPDSLETSDSDSDSDSETDSDSSSSSSSSSSSSS
SSSSSCISLPPVLSDGDDDLQIEKENKNFPLKTKDELLLNELPSVEELTIILPEDIELKPLGMVSSIIEQ
LVIIESMTNLPPVNEETVIFKSDRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMYFAPSMK
DFTQYIFTEKLKQDKGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQGRKKLKSEFNEPGEDFTE
VHQNWNAHSSASEHAKGYRNREFTRGFSRARYPRSCHGRPPPQHFYNSEHMVSQETSGFPSQRQNNPIMP
QYPFPLPVFDMHNFPLRPPPPPPPPPVNMGWATPNMAAHPLLNLPYSLPPPPPPPPLPPPPSSGDSNSHF
GPYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH