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Report for CCDS33353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33353.1 Public Homo sapiens 2 SLC39A10 24 110 108 CCDS HistoryNCBI Gene:57181Re-query CCDS DB by CCDS ID:33353.1Re-query CCDS DB by GeneID:57181See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33353.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359634.10 ENSP00000352655.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359634.10Link to Ensembl Protein Viewer:ENSP00000352655.5Re-query CCDS DB by Nucleotide ID:ENST00000359634Re-query CCDS DB by Protein ID:ENSP00000352655
Original member Current member EBI ENST00000409086.7 ENSP00000386766.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409086.7Link to Ensembl Protein Viewer:ENSP00000386766.3Re-query CCDS DB by Nucleotide ID:ENST00000409086Re-query CCDS DB by Protein ID:ENSP00000386766
Original member Current member NCBI NM_001127257.2 NP_001120729.1 Accepted alive Link to Nucleotide Sequence:NM_001127257.2Link to Protein Sequence:NP_001120729.1Re-query CCDS DB by Nucleotide ID:NM_001127257Re-query CCDS DB by Protein ID:NP_001120729Link to BLAST:NP_001120729.1
Original member Current member NCBI NM_020342.3 NP_065075.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020342.3Link to Protein Sequence:NP_065075.1Re-query CCDS DB by Nucleotide ID:NM_020342Re-query CCDS DB by Protein ID:NP_065075Link to BLAST:NP_065075.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120729.1 831 Q9ULF5-1 831 100% 0 0
NP_065075.1 831 Q9ULF5-1 831 100% 0 0

Chromosomal Locations for CCDS 33353.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 195680043 195681050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 195683699 195683906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 195706616 195706785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 195708656 195708844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 195713433 195713553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 195716637 195717005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 195718252 195718332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 195728159 195728349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 195734883 195735041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2496 nt):
ATGAAGGTACATATGCACACAAAATTTTGCCTCATTTGTTTGCTGACATTTATTTTTCATCATTGCAACC
ATTGCCATGAAGAACATGACCATGGCCCTGAAGCGCTTCACAGACAGCATCGTGGAATGACAGAATTGGA
GCCAAGCAAATTTTCAAAGCAAGCTGCTGAAAATGAAAAAAAATACTATATTGAAAAACTTTTTGAGCGT
TATGGTGAAAATGGAAGATTATCCTTTTTTGGTTTGGAGAAACTTTTAACAAACTTGGGCCTTGGAGAGA
GAAAAGTAGTTGAGATTAATCATGAGGATCTTGGCCACGATCATGTTTCTCATTTAGATATTTTGGCAGT
TCAAGAGGGAAAGCATTTTCACTCACATAACCACCAGCATTCCCATAATCATTTAAATTCAGAAAATCAA
ACTGTGACCAGTGTATCCACAAAAAGAAACCATAAATGTGATCCAGAGAAAGAGACAGTTGAAGTGTCTG
TAAAATCTGATGATAAACATATGCATGACCATAATCACCGCCTACGTCATCACCATCGTTTGCATCATCA
TCTTGATCATAACAACACTCACCATTTTCATAATGATTCCATTACTCCCAGTGAGCGTGGGGAGCCTAGC
AATGAACCTTCAACAGAGACCAATAAAACCCAGGAACAATCTGATGTTAAACTACCGAAAGGAAAGAGGA
AGAAAAAAGGGAGGAAAAGTAATGAAAATTCTGAGGTTATTACACCAGGTTTTCCCCCTAACCATGATCA
GGGTGAACAGTATGAGCATAATCGGGTCCACAAACCTGATCGTGTACATAACCCAGGTCATTCTCATGTA
CATCTTCCAGAACGTAATGGTCATGATCCTGGTCGTGGACACCAAGATCTTGATCCTGATAATGAAGGTG
AACTTCGACATACTAGAAAGAGAGAAGCACCACATGTTAAAAATAATGCAATAATTTCTTTGAGAAAAGA
TCTAAATGAAGATGACCATCATCATGAATGTTTGAACGTCACTCAGTTATTAAAATACTATGGTCATGGT
GCCAACTCTCCCATCTCAACTGATTTATTTACATACCTTTGCCCTGCATTGTTATATCAAATCGACAGCA
GACTTTGTATTGAGCATTTTGACAAACTTTTAGTTGAAGATATAAATAAGGATAAAAACCTGGTTCCTGA
AGATGAGGCAAATATAGGGGCATCAGCCTGGATTTGTGGTATCATTTCTATCACTGTCATTAGCCTGCTT
TCCTTGCTAGGCGTGATCTTGGTTCCTATCATTAACCAAGGATGCTTCAAATTCCTTCTTACATTCCTTG
TTGCATTAGCTGTAGGAACAATGAGTGGAGACGCCCTTCTTCATCTACTGCCCCATTCTCAGGGTGGACA
TGATCACAGTCACCAACATGCACATGGGCATGGACATTCTCATGGACATGAATCTAACAAGTTTTTGGAA
GAATATGATGCTGTATTGAAAGGACTTGTTGCTCTAGGAGGCATTTACTTGCTATTTATCATTGAACACT
GCATTAGAATGTTTAAGCACTACAAACAACAAAGAGGAAAACAGAAATGGTTTATGAAACAGAACACAGA
AGAATCAACTATTGGAAGAAAGCTTTCAGATCACAAGTTAAACAATACACCAGATTCTGACTGGCTTCAA
CTCAAGCCTCTTGCCGGAACTGATGACTCGGTTGTTTCTGAAGATCGACTTAATGAAACTGAACTGACAG
ATTTAGAAGGCCAACAAGAATCCCCTCCTAAAAATTACCTTTGTATAGAAGAGGAGAAAATCATAGACCA
TTCTCACAGTGATGGATTACATACCATTCATGAGCATGATCTCCATGCTGCTGCACATAACCACCACGGC
GAGAACAAAACTGTGCTGAGGAAGCATAATCACCAGTGGCACCACAAGCATTCTCATCATTCCCATGGCC
CCTGTCATTCTGGATCCGATCTGAAAGAAACAGGAATAGCTAATATAGCCTGGATGGTGATCATGGGGGA
TGGCATCCACAACTTCAGTGATGGGCTCGCAATTGGTGCAGCTTTCAGTGCTGGATTGACAGGAGGAATC
AGTACTTCTATAGCCGTCTTCTGTCATGAACTGCCACATGAATTAGGAGATTTTGCAGTTCTTCTTAAAG
CAGGCATGACTGTAAAGCAAGCAATTGTATACAACCTCCTCTCTGCCATGATGGCTTACATAGGCATGCT
CATAGGCACAGCTGTTGGTCAGTATGCCAATAACATCACACTTTGGATCTTTGCAGTCACTGCAGGCATG
TTCCTCTATGTAGCCTTGGTGGATATGCTTCCAGAAATGTTGCATGGTGATGGTGACAATGAAGAACATG
GCTTTTGTCCTGTGGGGCAATTCATCCTTCAGAATTTAGGATTGCTCTTTGGATTTGCCATTATGCTGGT
GATTGCCCTCTATGAAGATAAAATTGTGTTTGACATCCAGTTTTGA

Translation (831 aa):
MKVHMHTKFCLICLLTFIFHHCNHCHEEHDHGPEALHRQHRGMTELEPSKFSKQAAENEKKYYIEKLFER
YGENGRLSFFGLEKLLTNLGLGERKVVEINHEDLGHDHVSHLDILAVQEGKHFHSHNHQHSHNHLNSENQ
TVTSVSTKRNHKCDPEKETVEVSVKSDDKHMHDHNHRLRHHHRLHHHLDHNNTHHFHNDSITPSERGEPS
NEPSTETNKTQEQSDVKLPKGKRKKKGRKSNENSEVITPGFPPNHDQGEQYEHNRVHKPDRVHNPGHSHV
HLPERNGHDPGRGHQDLDPDNEGELRHTRKREAPHVKNNAIISLRKDLNEDDHHHECLNVTQLLKYYGHG
ANSPISTDLFTYLCPALLYQIDSRLCIEHFDKLLVEDINKDKNLVPEDEANIGASAWICGIISITVISLL
SLLGVILVPIINQGCFKFLLTFLVALAVGTMSGDALLHLLPHSQGGHDHSHQHAHGHGHSHGHESNKFLE
EYDAVLKGLVALGGIYLLFIIEHCIRMFKHYKQQRGKQKWFMKQNTEESTIGRKLSDHKLNNTPDSDWLQ
LKPLAGTDDSVVSEDRLNETELTDLEGQQESPPKNYLCIEEEKIIDHSHSDGLHTIHEHDLHAAAHNHHG
ENKTVLRKHNHQWHHKHSHHSHGPCHSGSDLKETGIANIAWMVIMGDGIHNFSDGLAIGAAFSAGLTGGI
STSIAVFCHELPHELGDFAVLLKAGMTVKQAIVYNLLSAMMAYIGMLIGTAVGQYANNITLWIFAVTAGM
FLYVALVDMLPEMLHGDGDNEEHGFCPVGQFILQNLGLLFGFAIMLVIALYEDKIVFDIQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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