NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46521.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46521.2 Public Homo sapiens 2 STK11IP 24 110 108 CCDS HistoryNCBI Gene:114790Re-query CCDS DB by CCDS ID:46521.2Re-query CCDS DB by GeneID:114790See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 46521.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available transcript and conservation data, and by most available haplotypic data, including that represented in the GRCh38 primary reference assembly allele.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46521.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000456909.6 ENSP00000389383.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000456909.6Link to Ensembl Protein Viewer:ENSP00000389383.1Re-query CCDS DB by Nucleotide ID:ENST00000456909Re-query CCDS DB by Protein ID:ENSP00000389383
Original member Current member NCBI NM_052902.4 NP_443134.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052902.4Link to Protein Sequence:NP_443134.3Re-query CCDS DB by Nucleotide ID:NM_052902Re-query CCDS DB by Protein ID:NP_443134Link to BLAST:NP_443134.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443134.3 1088 Q8N1F8 1088 100% 0 0

Chromosomal Locations for CCDS 46521.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 219598120 219598180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219601235 219601440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219601641 219601715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219601988 219602083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219602468 219602575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219602705 219602776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219605608 219605734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219605956 219606059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219606195 219606290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219606476 219606517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219606712 219606858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219607053 219607137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219608047 219608430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219608583 219608788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219609097 219609213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219609363 219609540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219611604 219611834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219611955 219612058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219613128 219613225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219613752 219613930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219614161 219614242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219614476 219614546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219615094 219615341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219616044 219616193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3267 nt):
ATGACGACCGCTCAGAGGGACTCCCTGTTGTGGAAGCTCGCGGGGTTGCTGCGGGAGTCCGGGGATGTGG
TCCTGTCTGGCTGTAGCACCCTGAGCCTGCTGACTCCCACACTGCAACAGCTGAACCACGTATTTGAGCT
GCACCTGGGGCCATGGGGCCCTGGCCAGACAGGCTTTGTGGCTCTGCCCTCCCATCCTGCCGACTCCCCT
GTTATTCTTCAGCTTCAGTTTCTCTTCGATGTGCTGCAGAAAACACTTTCACTCAAGCTGGTCCATGTTG
CTGGTCCTGGCCCCACAGGGCCCATCAAGATTTTCCCCTTCAAATCCCTTCGGCACCTGGAGCTCCGAGG
TGTTCCCCTCCACTGTCTGCATGGCCTCCGAGGCATCTACTCCCAGCTGGAGACCCTGATTTGCAGCAGG
AGCCTCCAGGCATTAGAGGAGCTCCTCTCAGCCTGCGGCGGCGACTTCTGCTCTGCCCTCCCTTGGCTGG
CTCTGCTTTCTGCCAACTTCAGCTACAATGCACTGACCGCCTTAGACAGCTCCCTGCGCCTCTTGTCAGC
TCTGCGTTTCTTGAACCTAAGCCACAATCAAGTCCAGGACTGTCAGGGATTCCTGATGGATTTGTGTGAG
CTCCACCATCTGGACATCTCCTATAATCGCCTGCATTTGGTGCCAAGAATGGGACCCTCAGGGGCTGCTC
TGGGGGTCCTGATACTGCGAGGCAATGAGCTTCGGAGCCTGCATGGCCTAGAGCAGCTGAGGAATCTGCG
GCACCTGGATTTGGCATACAACCTGCTGGAAGGACACCGGGAGCTGTCACCACTGTGGCTGCTGGCTGAG
CTCCGCAAGCTCTACCTGGAGGGGAACCCTCTTTGGTTCCACCCTGAGCACCGAGCAGCCACTGCCCAGT
ACTTGTCACCCCGGGCCAGGGATGCTGCTACTGGCTTCCTTCTCGATGGCAAGGTCTTGTCACTGACAGA
TTTTCAGACTCACACATCCTTGGGGCTCAGCCCCATGGGCCCACCTTTGCCCTGGCCAGTGGGGAGTACT
CCTGAAACCTCAGGTGGCCCTGACCTGAGTGACAGCCTCTCCTCAGGGGGTGTTGTGACCCAGCCCCTGC
TTCATAAGGTTAAGAGCCGAGTCCGTGTGAGGCGGGCAAGCATCTCTGAACCCAGTGATACGGACCCGGA
GCCCCGAACTCTGAACCCCTCTCCGGCTGGATGGTTCGTGCAGCAGCACCCGGAGCTGGAGCTCATGAGC
AGCTTCCGGGAACGGTTCGGCCGCAACTGGCTGCAGTACAGGAGTCACCTGGAGCCCTCCGGAAACCCTC
TGCCGGCCACCCCCACTACTTCTGCACCCAGTGCACCTCCAGCCAGCTCCCAGGGCCCCGACACTGCACC
CAGACCTTCACCCCCGCAGGAGGAAGCCAGAGGCCCCCAGGAGTCACCACAGAAAATGTCAGAGGAGGTC
AGGGCGGAGCCACAGGAGGAGGAAGAGGAGAAGGAGGGGAAGGAGGAGAAGGAGGAGGGGGAGATGGTGG
AACAGGGAGAAGAGGAGGCAGGAGAGGAGGAAGAAGAGGAGCAGGACCAGAAGGAAGTGGAAGCGGAACT
CTGTCGCCCCTTGTTGGTGTGTCCCCTGGAGGGGCCTGAGGGCGTACGGGGCAGGGAATGCTTTCTCAGG
GTCACTTCTGCCCACCTGTTTGAGGTGGAACTCCAAGCAGCTCGCACCTTGGAGCGACTGGAGCTCCAGA
GTCTGGAGGCAGCTGAGATAGAGCCGGAGGCCCAGGCCCAGAGGTCGCCCAGGCCCACGGGCTCAGATCT
GCTCCCTGGAGCCCCCATCCTCAGTCTGCGCTTCTCCTACATCTGCCCTGACCGGCAGTTGCGTCGCTAT
TTGGTGCTGGAGCCTGATGCCCACGCAGCTGTCCAGGAGCTGCTTGCCGTGTTGACCCCAGTCACCAATG
TGGCTCGGGAACAGCTTGGGGAGGCCAGGGACCTCCTGCTGGGTAGATTCCAGTGTCTACGCTGTGGCCA
TGAGTTCAAGCCAGAGGAGCCCAGGATGGGATTAGACAGTGAGGAAGGCTGGAGGCCTCTGTTCCAAAAG
ACAGAATCTCCTGCTGTGTGTCCTAACTGTGGTAGTGACCACGTGGTTCTCCTCGCTGTGTCTCGGGGAA
CCCCCAACAGGGAGCGGAAACAGGGAGAGCAGTCTCTGGCTCCTTCTCCGTCTGCCAGCCCTGTCTGCCA
CCCTCCTGGCCATGGTGACCACCTTGACAGGGCCAAGAACAGCCCACCTCAGGCACCGAGCACCCGTGAC
CATGGTAGTTGGAGCCTCAGTCCCCCCCCTGAGCGCTGTGGCCTCCGCTCTGTGGACCACCGACTCCGGC
TCTTCCTGGATGTTGAGGTGTTCAGCGATGCCCAGGAGGAGTTCCAGTGCTGCCTCAAGGTGCCAGTGGC
ATTGGCAGGCCACACTGGGGAGTTCATGTGCCTTGTGGTTGTGTCTGACCGCAGGCTGTACCTGTTGAAG
GTGACTGGGGAGATGCGTGAGCCTCCAGCTAGCTGGCTGCAGCTGACCCTGGCTGTTCCCCTGCAGGATC
TGAGTGGCATAGAGCTGGGCCTGGCAGGCCAGAGCCTGCGGCTAGAGTGGGCAGCTGGGGCGGGCCGCTG
TGTGCTGCTGCCCCGAGATGCCAGGCATTGCCGGGCCTTCCTAGAGGAGCTCCTTGATGTCTTGCAGTCT
CTGCCCCCTGCCTGGAGGAACTGTGTCAGTGCCACAGAGGAGGAGGTCACCCCCCAGCACCGGCTCTGGC
CATTGCTGGAAAAAGACTCATCCTTGGAGGCTCGCCAGTTCTTCTACCTTCGGGCGTTCCTGGTTGAAGG
CCCTTCCACCTGCCTCGTATCCCTGTTGCTGACTCCGTCCACCCTGTTCCTGTTAGATGAGGATGCTGCA
GGGTCCCCGGCAGAGCCCTCTCCTCCAGCAGCATCTGGCGAAGCCTCTGAGAAGGTGCCTCCCTCGGGGC
CGGGCCCTGCTGTGCGTGTCAGGGAGCAGCAGCCACTCAGCAGCCTGAGCTCCGTGCTGCTCTACCGCTC
AGCCCCTGAGGACTTGCGGCTGCTCTTCTACGATGAGGTGTCCCGGCTGGAGAGCTTTTGGGCACTCCGT
GTGGTGTGTCAGGAGCAGCTGACAGCCCTGCTTGCCTGGATCCGGGAACCATGGGAGGAGCTGTTTTCCA
TCGGACTCCGGACAGTGATCCAAGAGGCGCTGGCCCTTGACCGATGA

Translation (1088 aa):
MTTAQRDSLLWKLAGLLRESGDVVLSGCSTLSLLTPTLQQLNHVFELHLGPWGPGQTGFVALPSHPADSP
VILQLQFLFDVLQKTLSLKLVHVAGPGPTGPIKIFPFKSLRHLELRGVPLHCLHGLRGIYSQLETLICSR
SLQALEELLSACGGDFCSALPWLALLSANFSYNALTALDSSLRLLSALRFLNLSHNQVQDCQGFLMDLCE
LHHLDISYNRLHLVPRMGPSGAALGVLILRGNELRSLHGLEQLRNLRHLDLAYNLLEGHRELSPLWLLAE
LRKLYLEGNPLWFHPEHRAATAQYLSPRARDAATGFLLDGKVLSLTDFQTHTSLGLSPMGPPLPWPVGST
PETSGGPDLSDSLSSGGVVTQPLLHKVKSRVRVRRASISEPSDTDPEPRTLNPSPAGWFVQQHPELELMS
SFRERFGRNWLQYRSHLEPSGNPLPATPTTSAPSAPPASSQGPDTAPRPSPPQEEARGPQESPQKMSEEV
RAEPQEEEEEKEGKEEKEEGEMVEQGEEEAGEEEEEEQDQKEVEAELCRPLLVCPLEGPEGVRGRECFLR
VTSAHLFEVELQAARTLERLELQSLEAAEIEPEAQAQRSPRPTGSDLLPGAPILSLRFSYICPDRQLRRY
LVLEPDAHAAVQELLAVLTPVTNVAREQLGEARDLLLGRFQCLRCGHEFKPEEPRMGLDSEEGWRPLFQK
TESPAVCPNCGSDHVVLLAVSRGTPNRERKQGEQSLAPSPSASPVCHPPGHGDHLDRAKNSPPQAPSTRD
HGSWSLSPPPERCGLRSVDHRLRLFLDVEVFSDAQEEFQCCLKVPVALAGHTGEFMCLVVVSDRRLYLLK
VTGEMREPPASWLQLTLAVPLQDLSGIELGLAGQSLRLEWAAGAGRCVLLPRDARHCRAFLEELLDVLQS
LPPAWRNCVSATEEEVTPQHRLWPLLEKDSSLEARQFFYLRAFLVEGPSTCLVSLLLTPSTLFLLDEDAA
GSPAEPSPPAASGEASEKVPPSGPGPAVRVREQQPLSSLSSVLLYRSAPEDLRLLFYDEVSRLESFWALR
VVCQEQLTALLAWIREPWEELFSIGLRTVIQEALALDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH