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Report for CCDS6422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6422.1 Public Homo sapiens 8 FBXL6 24 110 108 CCDS HistoryNCBI Gene:26233Re-query CCDS DB by CCDS ID:6422.1Re-query CCDS DB by GeneID:26233See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6422.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331890.6 ENSP00000330098.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331890.6Link to Ensembl Protein Viewer:ENSP00000330098.5Re-query CCDS DB by Nucleotide ID:ENST00000331890Re-query CCDS DB by Protein ID:ENSP00000330098
Original member Current member NCBI NM_012162.4 NP_036294.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012162.4Link to Protein Sequence:NP_036294.2Re-query CCDS DB by Nucleotide ID:NM_012162Re-query CCDS DB by Protein ID:NP_036294Link to BLAST:NP_036294.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036294.2 539 Q8N531-1 539 100% 0 0

Chromosomal Locations for CCDS 6422.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144355531 144355678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144355968 144356214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144356300 144356531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144356600 144356713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144356808 144356915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144356990 144357121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144357439 144357502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144357628 144357786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144358032 144358447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGCTGCCCCAGCCTCCCGGCAGGTCCGACGCAGAGCCCGGGCAGCGCCGCGGCCCCGCTCGGCCGAGG
ACTGGTGGTGGGACCGGCTGGCGCCGAGGGGCTCGGGGTACCACCTGCTGCAGTCCGACAGCATGCTGCT
GGTGCTGTCCGAACCCGGCCCCGCCCGGCCCCGCGCACAGCGGCGCGCTTCCCGCCGCACTCCCCGGCAG
CCGCCCCGGGGCCCCAGCGCCGCGGCCAAGCCCAAGGCCGGGCTCAGGTCCGAGGCGGCGGCCGCGCCCG
CACCCGCACCGGCACCCACGCCCACGCCCGAGGAAGGGCCCGACGCGGGCTGGGGAGACCGCATTCCCTT
GGAAATCCTGGTGCAGATTTTCGGGTTGTTGGTGGCGGCGGACGGCCCCATGCCCTTCCTGGGCAGGGCT
GCGCGCGTGTGCCGCCGCTGGCAGGAGGCCGCTTCCCAACCCGCGCTCTGGCACACCGTGACCCTGTCGT
CCCCGCTGGTCGGCCGGCCTGCCAAGGGCGGGGTCAAGGCGGAGAAGAAGCTCCTTGCTTCCCTGGAGTG
GCTTATGCCCAATCGGTTTTCACAGCTCCAGAGGCTGACCCTCATCCACTGGAAGTCTCAGGTACACCCC
GTGTTGAAGCTGGTAGGTGAGTGCTGTCCTCGGCTCACTTTCCTCAAGCTCTCCGGCTGCCACGGTGTGA
CTGCTGACGCTCTGGTCATGCTAGCCAAAGCCTGCTGCCAGCTCCATAGCCTGGACCTACAGCACTCCAT
GGTGGAGTCCACAGCTGTGGTGAGCTTCTTGGAGGAGGCAGGGTCCCGAATGCGCAAGTTGTGGCTGACC
TACAGCTCCCAGACGACAGCCATCCTGGGCGCACTGCTGGGCAGCTGCTGCCCCCAGCTCCAGGTCCTGG
AGGTGAGCACCGGCATCAACCGTAATAGCATTCCCCTTCAGCTGCCTGTCGAGGCTCTGCAGAAAGGCTG
CCCTCAGCTCCAGGTGCTGCGGCTGTTGAACCTGATGTGGCTGCCCAAGCCTCCGGGACGAGGGGTGGCT
CCCGGACCAGGCTTCCCTAGCCTAGAGGAGCTCTGCCTGGCGAGCTCAACCTGCAACTTTGTGAGCAACG
AGGTCCTGGGCCGCCTACTCCACGGCTCTCCCAACCTGCGCTTACTGGATCTTCGTGGCTGTGCGCGCAT
CACGCCGGCTGGCCTTCAGGATCTGCCATGTCGGGAGCTGGAGCAGCTTCATCTGGGCCTGTATGGCACG
TCAGACCGGCTGACTCTAGCCAAGGAGGGCAGCCCCTTTTTGACCCAGAAGTGGTGCCATACACTGCGAG
AACTGGACTTGAGTGGCCAGGGGTTCAGTGAGAAGGACCTGGAGCAGGCCCTGGCTGCCTTCTTAAGCAC
CCCTGGGGGCTCACACCCAGCCCTGTGCTCTCTTAACCTCAGGGGCACCCGGGTCACACCAAGCACTGTC
AGCTCTGTGATCAGCGGCTGCCCGGGCCTGCTCTACCTCAACCTGGAGTCCTGCCGCTGCCTTCCCCGGG
GTCTGAAGCGGGCCTACCGGGGCCTGGAGGAAGTCCAGTGGTGTCTGGAGCAGCTGCTCACCAGCCCCTC
ACCCAGCTAG

Translation (539 aa):
MAAPASRQVRRRARAAPRPRSAEDWWWDRLAPRGSGYHLLQSDSMLLVLSEPGPARPRAQRRASRRTPRQ
PPRGPSAAAKPKAGLRSEAAAAPAPAPAPTPTPEEGPDAGWGDRIPLEILVQIFGLLVAADGPMPFLGRA
ARVCRRWQEAASQPALWHTVTLSSPLVGRPAKGGVKAEKKLLASLEWLMPNRFSQLQRLTLIHWKSQVHP
VLKLVGECCPRLTFLKLSGCHGVTADALVMLAKACCQLHSLDLQHSMVESTAVVSFLEEAGSRMRKLWLT
YSSQTTAILGALLGSCCPQLQVLEVSTGINRNSIPLQLPVEALQKGCPQLQVLRLLNLMWLPKPPGRGVA
PGPGFPSLEELCLASSTCNFVSNEVLGRLLHGSPNLRLLDLRGCARITPAGLQDLPCRELEQLHLGLYGT
SDRLTLAKEGSPFLTQKWCHTLRELDLSGQGFSEKDLEQALAAFLSTPGGSHPALCSLNLRGTRVTPSTV
SSVISGCPGLLYLNLESCRCLPRGLKRAYRGLEEVQWCLEQLLTSPSPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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