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Report for CCDS6407.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6407.3 Public Homo sapiens 8 PYCR3 24 110 108 CCDS HistoryNCBI Gene:65263Re-query CCDS DB by CCDS ID:6407.3Re-query CCDS DB by GeneID:65263See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 6407.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6407.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000495276.6 ENSP00000480945.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000495276.6Link to Ensembl Protein Viewer:ENSP00000480945.1Re-query CCDS DB by Nucleotide ID:ENST00000495276Re-query CCDS DB by Protein ID:ENSP00000480945
Original member Current member NCBI NM_023078.6 NP_075566.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_023078.6Link to Protein Sequence:NP_075566.3Re-query CCDS DB by Nucleotide ID:NM_023078Re-query CCDS DB by Protein ID:NP_075566Link to BLAST:NP_075566.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075566.3 274 Q53H96-1 274 100% 0 0

Chromosomal Locations for CCDS 6407.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 143605700 143605882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143606062 143606154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143606467 143606679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143606953 143607132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143608062 143608126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 143609458 143609548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGCAGCTGCGGAGCCGTCTCCGCGGCGCGTGGGCTTCGTGGGCGCGGGCCGCATGGCGGGGGCCATCG
CGCAGGGCCTCATCAGAGCAGGAAAAGTGGAAGCTCAGCACATACTGGCCAGTGCACCAACAGACAGGAA
CCTATGTCACTTTCAAGCTCTGGGTTGCCGGACCACGCACTCCAACCAGGAGGTGCTGCAGAGCTGCCTG
CTCGTCATCTTTGCCACCAAGCCTCATGTGCTGCCAGCTGTCCTGGCAGAGGTGGCTCCTGTGGTCACCA
CTGAACACATCTTGGTGTCCGTGGCTGCTGGGGTGTCTCTGAGCACCCTGGAGGAGCTGCTGCCCCCAAA
CACACGGGTGCTGCGGGTCTTGCCCAACCTGCCCTGTGTGGTCCAGGAAGGGGCCATAGTGATGGCGCGG
GGCCGCCACGTGGGGAGCAGCGAGACCAAGCTCCTGCAGCATCTGCTGGAGGCCTGTGGGCGGTGTGAGG
AGGTGCCTGAAGCCTACGTCGACATCCACACTGGCCTCAGTGGCAGTGGCGTGGCCTTCGTGTGTGCATT
CTCCGAGGCCCTGGCTGAAGGAGCCGTCAAGATGGGCATGCCCAGCAGCCTGGCCCACCGCATCGCTGCC
CAGACCCTGCTGGGGACGGCCAAGATGCTGCTGCACGAGGGCCAACACCCAGCCCAGCTGCGCTCAGACG
TGTGCACCCCGGGTGGCACCACCATCTATGGACTCCACGCCCTGGAGCAGGGCGGGCTGCGAGCAGCCAC
CATGAGCGCCGTGGAGGCTGCCACCTGCCGGGCCAAGGAGCTCAGCAGAAAGTAG

Translation (274 aa):
MAAAEPSPRRVGFVGAGRMAGAIAQGLIRAGKVEAQHILASAPTDRNLCHFQALGCRTTHSNQEVLQSCL
LVIFATKPHVLPAVLAEVAPVVTTEHILVSVAAGVSLSTLEELLPPNTRVLRVLPNLPCVVQEGAIVMAR
GRHVGSSETKLLQHLLEACGRCEEVPEAYVDIHTGLSGSGVAFVCAFSEALAEGAVKMGMPSSLAHRIAA
QTLLGTAKMLLHEGQHPAQLRSDVCTPGGTTIYGLHALEQGGLRAATMSAVEAATCRAKELSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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