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Report for CCDS14177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14177.1 Public Homo sapiens X SYAP1 24 110 108 CCDS HistoryNCBI Gene:94056Re-query CCDS DB by CCDS ID:14177.1Re-query CCDS DB by GeneID:94056See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14177.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380155.4 ENSP00000369500.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380155.4Link to Ensembl Protein Viewer:ENSP00000369500.3Re-query CCDS DB by Nucleotide ID:ENST00000380155Re-query CCDS DB by Protein ID:ENSP00000369500
Original member Current member NCBI NM_032796.4 NP_116185.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032796.4Link to Protein Sequence:NP_116185.2Re-query CCDS DB by Nucleotide ID:NM_032796Re-query CCDS DB by Protein ID:NP_116185Link to BLAST:NP_116185.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116185.2 352 Q96A49 352 100% 0 0

Chromosomal Locations for CCDS 14177.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 16719725 16719899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16735227 16735345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16736166 16736232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16741716 16741789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16743701 16743840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16754945 16755093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16756663 16756721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16757162 16757309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16760232 16760359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGTTCCGGGGCTTGAGCAGTTGGTTGGGCTTGCAGCAGCCGGTGGCAGGCGGTGGGCAGCCCAATGGAG
ATGCTCCACCCGAGCAGCCGTCCGAGACGGTGGCTGAGTCTGCGGAGGAGGAGCTGCAGCAAGCGGGAGA
CCAGGAGCTCCTCCACCAGGCCAAAGACTTCGGCAACTATTTATTTAACTTTGCATCTGCTGCCACAAAA
AAGATAACTGAATCAGTTGCTGAAACAGCACAAACAATAAAGAAATCCGTAGAAGAAGGAAAAATAGATG
GCATCATTGACAAGACAATTATAGGAGATTTTCAGAAGGAACAGAAAAAATTTGTTGAAGAGCAACATAC
AAAGAAGTCAGAAGCAGCTGTGCCCCCATGGGTTGACACTAACGATGAAGAAACAATTCAACAACAAATT
TTGGCCTTATCAGCTGACAAGAGGAATTTCCTTCGTGACCCTCCGGCTGGCGTGCAATTTAATTTCGACT
TTGATCAGATGTACCCCGTGGCCCTGGTCATGCTCCAGGAGGATGAGCTGCTAAGCAAGATGAGATTTGC
CCTCGTTCCTAAACTTGTGAAGGAAGAAGTGTTCTGGAGGAACTACTTTTACCGCGTCTCCCTGATTAAG
CAGTCAGCCCAGCTCACGGCCCTGGCTGCCCAACAGCAGGCCGCAGGGAAGGAGGAGAAGAGCAATGGCA
GAGAGCAAGATTTGCCGCTGGCAGAGGCAGTACGGCCCAAAACGCCACCCGTTGTAATCAAATCTCAGCT
TAAAACTCAAGAGGATGAGGAAGAAATTTCTACTAGCCCAGGTGTTTCTGAGTTTGTCAGTGATGCCTTC
GATGCCTGTAACCTAAATCAGGAAGATCTAAGGAAAGAAATGGAGCAACTAGTGCTTGACAAAAAGCAAG
AGGAGACAGCCGTACTGGAAGAGGATTCTGCAGATTGGGAAAAAGAACTGCAGCAGGAACTTCAAGAATA
TGAAGTGGTGACAGAATCTGAAAAACGAGATGAAAACTGGGATAAGGAAATAGAGAAAATGCTTCAAGAG
GAAAATTAG

Translation (352 aa):
MFRGLSSWLGLQQPVAGGGQPNGDAPPEQPSETVAESAEEELQQAGDQELLHQAKDFGNYLFNFASAATK
KITESVAETAQTIKKSVEEGKIDGIIDKTIIGDFQKEQKKFVEEQHTKKSEAAVPPWVDTNDEETIQQQI
LALSADKRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRVSLIK
QSAQLTALAAQQQAAGKEEKSNGREQDLPLAEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAF
DACNLNQEDLRKEMEQLVLDKKQEETAVLEEDSADWEKELQQELQEYEVVTESEKRDENWDKEIEKMLQE
EN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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