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Report for CCDS9476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9476.1 Public Homo sapiens 13 CLDN10 24 110 108 CCDS HistoryNCBI Gene:9071Re-query CCDS DB by CCDS ID:9476.1Re-query CCDS DB by GeneID:9071See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9476.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299339.3 ENSP00000299339.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299339.3Link to Ensembl Protein Viewer:ENSP00000299339.2Re-query CCDS DB by Nucleotide ID:ENST00000299339Re-query CCDS DB by Protein ID:ENSP00000299339
Original member Current member NCBI NM_006984.5 NP_008915.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006984.5Link to Protein Sequence:NP_008915.1Re-query CCDS DB by Nucleotide ID:NM_006984Re-query CCDS DB by Protein ID:NP_008915Link to BLAST:NP_008915.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008915.1 228 P78369-1 228 100% 0 0

Chromosomal Locations for CCDS 9476.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 95552754 95552973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95560132 95560293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95560382 95560463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95577231 95577338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95577900 95578014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGGCTAGCACGGCTTCGGAGATCATCGCCTTCATGGTCTCCATCTCAGGCTGGGTACTGGTGTCCTCCA
CGCTGCCCACCGACTACTGGAAGGTGTCTACCATCGACGGCACGGTCATCACAACCGCCACCTATTGGGC
CAACCTGTGGAAGGCGTGCGTTACCGACTCCACGGGCGTCTCCAACTGCAAGGACTTCCCCTCCATGCTG
GCGCTGGACGGTTATATACAGGCATGTAGAGGACTTATGATCGCTGCTGTCAGCCTGGGCTTCTTTGGTT
CCATATTTGCGCTCTTTGGAATGAAGTGTACCAAAGTCGGAGGCTCCGATAAAGCCAAAGCTAAAATTGC
TTGTTTGGCTGGGATTGTATTCATACTGTCAGGGCTGTGCTCAATGACTGGATGTTCCCTATATGCAAAC
AAAATCACAACGGAATTCTTTGATCCTCTCTTTGTTGAGCAAAAGTATGAATTAGGAGCCGCTCTGTTTA
TTGGATGGGCAGGAGCCTCACTGTGCATAATTGGTGGTGTCATATTTTGCTTTTCAATATCTGACAACAA
CAAAACACCCAGATACACATACAACGGGGCCACATCTGTCATGTCTTCTCGGACAAAGTATCATGGTGGA
GAAGATTTTAAAACAACAAACCCTTCAAAACAGTTTGATAAAAATGCTTATGTCTAA

Translation (228 aa):
MASTASEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKDFPSML
ALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMTGCSLYAN
KITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDNNKTPRYTYNGATSVMSSRTKYHGG
EDFKTTNPSKQFDKNAYV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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