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Report for CCDS41289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41289.1 Public Homo sapiens 1 TRNP1 24 110 108 CCDS HistoryNCBI Gene:388610Re-query CCDS DB by CCDS ID:41289.1Re-query CCDS DB by GeneID:388610See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 41289.1
This CCDS ID represents the protein described in PMID: 16792503 and is supported by the mRNA BC069216.1. It should be noted that this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously in mouse as shown in PMID: 16792503. It is likely that the majority of transcripts representing this variant will undergo NMD, while some low level of NMD escape may allow for the expression of this protein.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 41289.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000522111.3 ENSP00000429216.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000522111.3Link to Ensembl Protein Viewer:ENSP00000429216.2Re-query CCDS DB by Nucleotide ID:ENST00000522111Re-query CCDS DB by Protein ID:ENSP00000429216
Original member Current member NCBI NM_001013642.3 NP_001013664.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001013642.3Link to Protein Sequence:NP_001013664.2Re-query CCDS DB by Nucleotide ID:NM_001013642Re-query CCDS DB by Protein ID:NP_001013664Link to BLAST:NP_001013664.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013664.2 227 Q6NT89 227 100% 0 0

Chromosomal Locations for CCDS 41289.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26993787 26994470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGCCGGGCTGCCGCATCAGCGCCTGCGGCCCGGGGGCCCAGGAGGGGACGGCAGAGCAGAGGTCGCCGC
CGCCGCCCTGGGATCCCATGCCGTCCTCTCAGCCCCCGCCCCCAACTCCGACCTTGACTCCTACCCCGAC
CCCGGGTCAGTCCCCGCCGCTGCCGGACGCAGCTGGGGCTTCAGCAGGCGCGGCCGAGGACCAGGAGCTG
CAGCGCTGGCGCCAGGGCGCTAGCGGGATCGCGGGGCTCGCCGGCCCCGGAGGGGGCTCTGGCGCGGCTG
CGGGGGCGGGGGGCCGCGCGCTGGAGCTGGCCGAAGCACGGCGGCGGCTGCTGGAGGTGGAGGGCCGCCG
GCGCCTGGTGTCGGAGCTGGAGAGCCGCGTGCTGCAGCTGCACCGCGTTTTCTTGGCGGCCGAGCTGCGC
CTGGCGCACCGCGCGGAGAGCCTGAGCCGCCTGAGCGGCGGCGTGGCGCAGGCCGAGCTCTACCTGGCGG
CTCACGGGTCGCGCCTCAAGAAGGGCCCGCGCCGCGGCCGCCGCGGCCGACCCCCCGCGCTGCTGGCCTC
GGCGCTGGGCCTGGGCGGCTGCGTGCCCTGGGGTGCCGGGCGACTGCGGCGCGGCCACGGCCCCGAGCCC
GACTCGCCCTTCCGCCGCAGCCCGCCCCGCGGCCCCGCCTCCCCGCAGCGCTGA

Translation (227 aa):
MPGCRISACGPGAQEGTAEQRSPPPPWDPMPSSQPPPPTPTLTPTPTPGQSPPLPDAAGASAGAAEDQEL
QRWRQGASGIAGLAGPGGGSGAAAGAGGRALELAEARRRLLEVEGRRRLVSELESRVLQLHRVFLAAELR
LAHRAESLSRLSGGVAQAELYLAAHGSRLKKGPRRGRRGRPPALLASALGLGGCVPWGAGRLRRGHGPEP
DSPFRRSPPRGPASPQR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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