NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12627.1 Public Homo sapiens 19 CADM4 24 110 108 CCDS HistoryNCBI Gene:199731Re-query CCDS DB by CCDS ID:12627.1Re-query CCDS DB by GeneID:199731See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12627.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000222374.3 ENSP00000222374.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000222374.3Link to Ensembl Protein Viewer:ENSP00000222374.1Re-query CCDS DB by Nucleotide ID:ENST00000222374Re-query CCDS DB by Protein ID:ENSP00000222374
Original member Current member NCBI NM_145296.2 NP_660339.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145296.2Link to Protein Sequence:NP_660339.1Re-query CCDS DB by Nucleotide ID:NM_145296Re-query CCDS DB by Protein ID:NP_660339Link to BLAST:NP_660339.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660339.1 388 Q8NFZ8 388 100% 0 0

Chromosomal Locations for CCDS 12627.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43623330 43623439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43624114 43624242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43625078 43625250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43625911 43626001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43626124 43626288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43626784 43626918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43627166 43627318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43627644 43627790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43639727 43639790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGGCCGGGCCCGGCGCTTCCAGTGGCCGCTGCTGCTGCTGTGGGCGGCCGCGGCGGGGCCAGGGGCAG
GACAGGAAGTACAGACAGAGAACGTGACAGTGGCTGAGGGTGGGGTGGCTGAGATCACCTGCCGTCTGCA
CCAGTATGATGGGTCCATAGTTGTCATCCAGAACCCAGCCCGGCAGACCCTCTTCTTCAATGGCACCCGT
GCCTTGAAGGATGAGCGTTTCCAGCTTGAGGAGTTCTCCCCACGCCGGGTGCGGATCCGGCTCTCAGATG
CCCGCCTGGAGGACGAGGGGGGCTATTTCTGCCAGCTCTACACAGAAGACACCCACCACCAGATTGCCAC
GCTCACGGTACTAGTGGCCCCAGAGAATCCTGTGGTGGAGGTCCGGGAGCAGGCGGTAGAGGGCGGCGAG
GTGGAGCTCAGCTGCCTCGTTCCGCGGTCCCGTCCGGCTGCCACCCTGCGCTGGTACCGGGACCGCAAGG
AGCTGAAAGGAGTGAGCAGCAGCCAGGAAAATGGCAAGGTCTGGAGCGTGGCAAGCACAGTACGGTTTCG
TGTGGACCGTAAGGACGACGGTGGTATCATCATCTGTGAGGCGCAGAACCAGGCGCTGCCCTCCGGACAC
AGCAAGCAGACGCAGTACGTGCTGGATGTGCAGTACTCCCCCACGGCCCGGATTCATGCCTCCCAAGCTG
TGGTGAGGGAGGGAGACACGCTGGTGTTGACGTGTGCTGTCACGGGGAACCCCAGGCCAAACCAGATCCG
CTGGAACCGCGGGAATGAGTCTTTGCCGGAGAGGGCGGAGGCCGTGGGAGAGACGCTCACGCTGCCGGGT
CTGGTATCCGCGGATAACGGCACCTACACTTGCGAGGCGTCCAATAAGCACGGCCATGCGAGGGCGCTCT
ACGTACTTGTGGTCTACGACCCTGGTGCGGTGGTAGAGGCTCAGACGTCGGTTCCCTATGCCATTGTGGG
CGGCATCCTGGCGCTGCTGGTGTTTCTGATCATATGTGTGCTAGTGGGCATGGTCTGGTGCTCGGTACGG
CAGAAGGGTTCCTATCTGACCCACGAAGCCAGTGGCTTGGATGAACAGGGAGAAGCAAGAGAAGCCTTCC
TCAATGGCAGCGACGGACACAAGAGGAAAGAGGAATTCTTCATCTGA

Translation (388 aa):
MGRARRFQWPLLLLWAAAAGPGAGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPARQTLFFNGTR
ALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTVLVAPENPVVEVREQAVEGGE
VELSCLVPRSRPAATLRWYRDRKELKGVSSSQENGKVWSVASTVRFRVDRKDDGGIIICEAQNQALPSGH
SKQTQYVLDVQYSPTARIHASQAVVREGDTLVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETLTLPG
LVSADNGTYTCEASNKHGHARALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVR
QKGSYLTHEASGLDEQGEAREAFLNGSDGHKRKEEFFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH