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Report for CCDS11988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11988.1 Public Homo sapiens 18 SERPINB7 24 110 108 CCDS HistoryNCBI Gene:8710Re-query CCDS DB by CCDS ID:11988.1Re-query CCDS DB by GeneID:8710See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11988.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336429.6 ENSP00000337212.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336429.6Link to Ensembl Protein Viewer:ENSP00000337212.2Re-query CCDS DB by Nucleotide ID:ENST00000336429Re-query CCDS DB by Protein ID:ENSP00000337212
Original member Current member EBI ENST00000398019.7 ENSP00000381101.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398019.7Link to Ensembl Protein Viewer:ENSP00000381101.2Re-query CCDS DB by Nucleotide ID:ENST00000398019Re-query CCDS DB by Protein ID:ENSP00000381101
Original member Current member EBI ENST00000546027.5 ENSP00000444861.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546027.5Link to Ensembl Protein Viewer:ENSP00000444861.1Re-query CCDS DB by Nucleotide ID:ENST00000546027Re-query CCDS DB by Protein ID:ENSP00000444861
Original member Current member NCBI NM_001040147.3 NP_001035237.1 Accepted alive Link to Nucleotide Sequence:NM_001040147.3Link to Protein Sequence:NP_001035237.1Re-query CCDS DB by Nucleotide ID:NM_001040147Re-query CCDS DB by Protein ID:NP_001035237Link to BLAST:NP_001035237.1
Original member Current member NCBI NM_001261830.2 NP_001248759.1 Accepted alive Link to Nucleotide Sequence:NM_001261830.2Link to Protein Sequence:NP_001248759.1Re-query CCDS DB by Nucleotide ID:NM_001261830Re-query CCDS DB by Protein ID:NP_001248759Link to BLAST:NP_001248759.1
Original member Current member NCBI NM_003784.4 NP_003775.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003784.4Link to Protein Sequence:NP_003775.1Re-query CCDS DB by Nucleotide ID:NM_003784Re-query CCDS DB by Protein ID:NP_003775Link to BLAST:NP_003775.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035237.1 380 O75635-1 380 100% 0 0
NP_001248759.1 380 O75635-1 380 100% 0 0
NP_003775.1 380 O75635-1 380 100% 0 0

Chromosomal Locations for CCDS 11988.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 63782373 63782540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63792393 63792443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63793161 63793277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63796266 63796383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63798604 63798746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63800866 63801012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63804237 63804635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAACCTGTTCAGAGAGATGGATGACAATCAAG
GAAATGGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGCTCA
AGATGACTCCCTCTCTCAGATTGATAAGTTGCTTCATGTTAACACTGCCTCAGGATATGGAAACTCTTCT
AATAGTCAGTCAGGGCTCCAGTCTCAACTGAAAAGAGTTTTTTCTGATATAAATGCATCCCACAAGGATT
ATGATCTCAGCATTGTGAATGGGCTTTTTGCTGAAAAAGTGTATGGCTTTCATAAGGACTACATTGAGTG
TGCCGAAAAATTATACGATGCCAAAGTGGAGCGAGTTGACTTTACGAATCATTTAGAAGACACTAGACGT
AATATTAATAAGTGGGTTGAAAATGAAACACATGGCAAAATCAAGAACGTGATTGGTGAAGGTGGCATAA
GCTCATCTGCTGTAATGGTGCTGGTGAATGCTGTGTACTTCAAAGGCAAGTGGCAATCAGCCTTCACCAA
GAGCGAAACCATAAATTGCCATTTCAAATCTCCCAAGTGCTCTGGGAAGGCAGTCGCCATGATGCATCAG
GAACGGAAGTTCAATTTGTCTGTTATTGAGGACCCATCAATGAAGATTCTTGAGCTCAGATACAATGGTG
GCATAAACATGTACGTTCTGCTGCCTGAGAATGACCTCTCTGAAATTGAAAACAAACTGACCTTTCAGAA
TCTAATGGAATGGACCAATCCAAGGCGAATGACCTCTAAGTATGTTGAGGTATTTTTTCCTCAGTTCAAG
ATAGAGAAGAATTATGAAATGAAACAATATTTGAGAGCCCTAGGGCTGAAAGATATCTTTGATGAATCCA
AAGCAGATCTCTCTGGGATTGCTTCGGGGGGTCGTCTGTATATATCAAGGATGATGCACAAATCTTACAT
AGAGGTCACTGAGGAGGGCACCGAGGCTACTGCTGCCACAGGAAGTAATATTGTAGAAAAGCAACTCCCT
CAGTCCACGCTGTTTAGAGCTGACCACCCATTCCTATTTGTTATCAGGAAGGATGACATCATCTTATTCA
GTGGCAAAGTTTCTTGCCCTTGA

Translation (380 aa):
MASLAAANAEFCFNLFREMDDNQGNGNVFFSSLSLFAALALVRLGAQDDSLSQIDKLLHVNTASGYGNSS
NSQSGLQSQLKRVFSDINASHKDYDLSIVNGLFAEKVYGFHKDYIECAEKLYDAKVERVDFTNHLEDTRR
NINKWVENETHGKIKNVIGEGGISSSAVMVLVNAVYFKGKWQSAFTKSETINCHFKSPKCSGKAVAMMHQ
ERKFNLSVIEDPSMKILELRYNGGINMYVLLPENDLSEIENKLTFQNLMEWTNPRRMTSKYVEVFFPQFK
IEKNYEMKQYLRALGLKDIFDESKADLSGIASGGRLYISRMMHKSYIEVTEEGTEATAATGSNIVEKQLP
QSTLFRADHPFLFVIRKDDIILFSGKVSCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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