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Report for CCDS45408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45408.1 Public Homo sapiens 16 TVP23A 24 110 108 CCDS HistoryNCBI Gene:780776Re-query CCDS DB by CCDS ID:45408.1Re-query CCDS DB by GeneID:780776See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45408.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299866.13 ENSP00000299866.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299866.13Link to Ensembl Protein Viewer:ENSP00000299866.8Re-query CCDS DB by Nucleotide ID:ENST00000299866Re-query CCDS DB by Protein ID:ENSP00000299866
Original member Current member EBI ENST00000575135.5 ENSP00000460567.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000575135.5Link to Ensembl Protein Viewer:ENSP00000460567.1Re-query CCDS DB by Nucleotide ID:ENST00000575135Re-query CCDS DB by Protein ID:ENSP00000460567
Original member Current member NCBI NM_001079512.4 NP_001072980.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001079512.4Link to Protein Sequence:NP_001072980.1Re-query CCDS DB by Nucleotide ID:NM_001079512Re-query CCDS DB by Protein ID:NP_001072980Link to BLAST:NP_001072980.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001072980.1 213 A6NH52-1 213 100% 0 0

Chromosomal Locations for CCDS 45408.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10770272 10770331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10771670 10771798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10773313 10773441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10774039 10774128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10774952 10775096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10818103 10818182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10818485 10818493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGAAGCAGGCCCTGGTGGACGATACCGAGGATGTGTCCCTGGACTTTGGAAACGAGGAGGAGCTGGCCT
TTAGGAAAGCCAAGATCAGACACCCCTTGGCCACCTTTTTCCACCTGTTTTTCCGAGTGAGTGCCATCGT
CACCTACGTGAGCTGCGACTGGTTCAGCAAGAGCTTTGTGGGCTGTTTTGTCATGGTGCTGCTCCTCCTG
TCCCTGGACTTCTGGTCTGTGAAGAATGTAACCGGAAGACTCCTGGTGGGCCTTCGATGGTGGAACCAGA
TAGATGAAGATGGGAAGAGCCACTGGATCTTTGAAGCCAGGAAGGTCTCTCCGAATAGCATTGCTGCCAC
AGAAGCTGAAGCACGAATCTTCTGGCTGGGCCTCATAATCTGCCCCATGATATGGATTGTGTTTTTTTTT
AGCACCTTATTTTCCTTGAAGCTAAAGTGGCTGGCTCTGGTGGTTGCTGGGATCTCTCTCCAAGCTGCAA
ACCTGTATGGCTACATCCTTTGTAAGATGGGAGGCAACAGTGACATTGGCAAGGTCACAGCCAGTTTCCT
GTCCCAGACAGTGTTCCAGACGGCCTGCCCAGGTGACTTTCAGAAGCCTGGCCTCGAGGGGCTGGAGATT
CACCAGCATTAG

Translation (213 aa):
MKQALVDDTEDVSLDFGNEEELAFRKAKIRHPLATFFHLFFRVSAIVTYVSCDWFSKSFVGCFVMVLLLL
SLDFWSVKNVTGRLLVGLRWWNQIDEDGKSHWIFEARKVSPNSIAATEAEARIFWLGLIICPMIWIVFFF
STLFSLKLKWLALVVAGISLQAANLYGYILCKMGGNSDIGKVTASFLSQTVFQTACPGDFQKPGLEGLEI
HQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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