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Report for CCDS7467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7467.1 Public Homo sapiens 10 HOGA1 24 110 108 CCDS HistoryNCBI Gene:112817Re-query CCDS DB by CCDS ID:7467.1Re-query CCDS DB by GeneID:112817See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7467.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370646.9 ENSP00000359680.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370646.9Link to Ensembl Protein Viewer:ENSP00000359680.4Re-query CCDS DB by Nucleotide ID:ENST00000370646Re-query CCDS DB by Protein ID:ENSP00000359680
Original member Current member NCBI NM_138413.4 NP_612422.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138413.4Link to Protein Sequence:NP_612422.2Re-query CCDS DB by Nucleotide ID:NM_138413Re-query CCDS DB by Protein ID:NP_612422Link to BLAST:NP_612422.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612422.2 327 Q86XE5-1 327 100% 0 0

Chromosomal Locations for CCDS 7467.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 97584704 97584914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97598775 97598903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97599089 97599216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97599680 97599814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97600067 97600163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97601857 97601990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 97611510 97611659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGCTGGGTCCCCAAGTCTGGTCTTCTGTGAGGCAGGGGCTAAGCAGGAGCTTGTCCAGGAATGTGGGGG
TCTGGGCCTCAGGGGAGGGGAAGAAGGTGGACATTGCGGGTATCTACCCCCCTGTGACCACCCCCTTCAC
TGCCACTGCAGAGGTGGACTATGGGAAACTGGAGGAGAATCTGCACAAACTGGGCACCTTCCCCTTCCGA
GGCTTCGTGGTCCAGGGCTCCAATGGCGAGTTTCCTTTCCTGACCAGCAGTGAGCGCCTCGAGGTGGTGA
GCCGTGTGCGCCAGGCCATGCCCAAGAACAGGCTCCTGCTAGCTGGCTCCGGATGCGAGTCCACTCAAGC
CACAGTGGAGATGACCGTCAGCATGGCCCAGGTCGGGGCTGACGCGGCCATGGTGGTGACCCCTTGCTAC
TATCGTGGCCGCATGAGCAGTGCGGCCCTCATTCACCACTACACCAAGGTTGCTGATCTCTCTCCAATCC
CTGTGGTGCTGTACAGTGTCCCAGCCAACACAGGGCTGGACCTGCCTGTGGATGCAGTGGTCACGCTTTC
CCAGCACCCGAATATTGTGGGCATGAAGGACAGCGGTGGTGATGTGACCAGGATTGGGCTGATTGTTCAC
AAGACCAGGAAGCAGGATTTTCAGGTGTTGGCTGGATCGGCTGGCTTTCTGATGGCCAGCTATGCCTTGG
GAGCTGTGGGGGGCGTCTGCGCCCTGGCCAATGTCCTGGGGGCTCAGGTGTGCCAGCTGGAGCGACTGTG
CTGCACGGGGCAATGGGAAGATGCCCAGAAACTGCAGCACCGCCTCATTGAGCCAAACGCTGCGGTGACC
CGGCGCTTTGGGATCCCAGGGCTGAAGAAAATCATGGACTGGTTTGGCTACTATGGAGGCCCCTGCCGCG
CCCCCTTGCAGGAGCTGAGCCCCGCTGAGGAGGAGGCACTGCGCATGGATTTCACCAGCAACGGCTGGCT
CTGA

Translation (327 aa):
MLGPQVWSSVRQGLSRSLSRNVGVWASGEGKKVDIAGIYPPVTTPFTATAEVDYGKLEENLHKLGTFPFR
GFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCY
YRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMKDSGGDVTRIGLIVH
KTRKQDFQVLAGSAGFLMASYALGAVGGVCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEPNAAVT
RRFGIPGLKKIMDWFGYYGGPCRAPLQELSPAEEEALRMDFTSNGWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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