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Report for CCDS5602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5602.1 Public Homo sapiens 7 TMEM243 24 110 108 CCDS HistoryNCBI Gene:79161Re-query CCDS DB by CCDS ID:5602.1Re-query CCDS DB by GeneID:79161See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5602.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257637.8 ENSP00000257637.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257637.8Link to Ensembl Protein Viewer:ENSP00000257637.3Re-query CCDS DB by Nucleotide ID:ENST00000257637Re-query CCDS DB by Protein ID:ENSP00000257637
Original member Current member EBI ENST00000433078.5 ENSP00000398083.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433078.5Link to Ensembl Protein Viewer:ENSP00000398083.1Re-query CCDS DB by Nucleotide ID:ENST00000433078Re-query CCDS DB by Protein ID:ENSP00000398083
Original member Current member NCBI NM_001329472.1 NP_001316401.1 Accepted alive Link to Nucleotide Sequence:NM_001329472.1Link to Protein Sequence:NP_001316401.1Re-query CCDS DB by Nucleotide ID:NM_001329472Re-query CCDS DB by Protein ID:NP_001316401Link to BLAST:NP_001316401.1
Original member Current member NCBI NM_001329473.2 NP_001316402.1 Accepted alive Link to Nucleotide Sequence:NM_001329473.2Link to Protein Sequence:NP_001316402.1Re-query CCDS DB by Nucleotide ID:NM_001329473Re-query CCDS DB by Protein ID:NP_001316402Link to BLAST:NP_001316402.1
Original member Current member NCBI NM_001329474.2 NP_001316403.1 Accepted alive Link to Nucleotide Sequence:NM_001329474.2Link to Protein Sequence:NP_001316403.1Re-query CCDS DB by Nucleotide ID:NM_001329474Re-query CCDS DB by Protein ID:NP_001316403Link to BLAST:NP_001316403.1
Original member Current member NCBI NM_001329475.2 NP_001316404.1 Accepted alive Link to Nucleotide Sequence:NM_001329475.2Link to Protein Sequence:NP_001316404.1Re-query CCDS DB by Nucleotide ID:NM_001329475Re-query CCDS DB by Protein ID:NP_001316404Link to BLAST:NP_001316404.1
Original member Current member NCBI NM_024315.4 NP_077291.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024315.4Link to Protein Sequence:NP_077291.1Re-query CCDS DB by Nucleotide ID:NM_024315Re-query CCDS DB by Protein ID:NP_077291Link to BLAST:NP_077291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316401.1 118 Q9BU79 118 100% 0 0
NP_001316402.1 118 Q9BU79 118 100% 0 0
NP_001316403.1 118 Q9BU79 118 100% 0 0
NP_001316404.1 118 Q9BU79 118 100% 0 0
NP_077291.1 118 Q9BU79 118 100% 0 0

Chromosomal Locations for CCDS 5602.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 87196636 87196758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87197941 87198045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87199007 87199057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 87219426 87219503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGGAGGACTTTGCTACCAGGACCTACGGCACCAGTGGCCTGGACAACAGACCTCTGTTTGGGGAGACGT
CCGCCAAGGATCGAATCATCAATTTAGTTGTTGGCAGCTTAACATCCTTATTGATTCTAGTAACGCTGAT
AAGTGCTTTTGTTTTCCCTCAACTACCTCCAAAACCGTTGAATATATTCTTTGCTGTCTGCATCTCTTTG
AGTAGTATTACTGCCTGCATACTTATCTACTGGTATCGACAAGGAGACTTAGAACCGAAATTTAGAAAGC
TAATTTACTATATCATATTTTCTATCATCATGTTGTGTATATGTGCAAACCTGTACTTCCATGATGTGGG
AAGGTGA

Translation (118 aa):
MEDFATRTYGTSGLDNRPLFGETSAKDRIINLVVGSLTSLLILVTLISAFVFPQLPPKPLNIFFAVCISL
SSITACILIYWYRQGDLEPKFRKLIYYIIFSIIMLCICANLYFHDVGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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