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Report for CCDS17457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17457.1 Public Mus musculus 3 Hdgf 23 108 98 CCDS HistoryNCBI Gene:15191Re-query CCDS DB by CCDS ID:17457.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17457.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005017.14 ENSMUSP00000005017.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005017.14Link to Ensembl Protein Viewer:ENSMUSP00000005017.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000005017Re-query CCDS DB by Protein ID:ENSMUSP00000005017
Original member NCBI NM_008231.4 NP_032257.3 Updated not alive Link to Nucleotide Sequence:NM_008231.4Link to Protein Sequence:NP_032257.3Re-query CCDS DB by Nucleotide ID:NM_008231Re-query CCDS DB by Protein ID:NP_032257
Current member NCBI NM_008231.5 NP_032257.3 Accepted alive Link to Nucleotide Sequence:NM_008231.5Link to Protein Sequence:NP_032257.3Re-query CCDS DB by Nucleotide ID:NM_008231Re-query CCDS DB by Protein ID:NP_032257Link to BLAST:NP_032257.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032257.3 237 P51859 237 100% 0 0

Chromosomal Locations for CCDS 17457.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87906628 87906714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87913091 87913167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87913313 87913451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87914052 87914237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87914473 87914690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87914902 87914908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGTCGCGATCCAACCGGCAGAAAGAGTACAAGTGCGGAGACCTGGTGTTTGCGAAGATGAAAGGATACC
CACACTGGCCGGCCCGGATTGATGAGATGCCTGAGGCTGCAGTGAAGTCAACAGCCAACAAATACCAAGT
CTTTTTTTTTGGGACCCATGAGACGGCATTCCTGGGCCCCAAAGACCTCTTCCCTTATGAGGAATCCAAG
GAGAAGTTTGGCAAGCCCAACAAGAGGAAAGGGTTCAGCGAGGGGCTGTGGGAGATCGAGAACAACCCTA
CAGTCAAGGCCTCTGGCTACCAGTCCTCCCAGAAAAAGAGTTGTGCGGCAGAGCCCGAGGTGGAGCCCGA
AGCCCATGAGGGTGACGGTGATAAGAAGGGCAGTGCAGAGGGCAGCAGCGACGAAGAAGGGAAACTGGTG
ATCGATGAACCAGCCAAGGAGAAGAACGAAAAGGGCACGCTGAAGAGGAGAGCAGGGGATGTGTTGGAGG
ACTCCCCTAAACGTCCCAAGGAGTCAGGAGACCATGAGGAGGAGGACAAGGAGATAGCTGCCTTGGAGGG
TGAGAGGCCCCTGCCTGTAGAGGTGGAGAAGAACAGCACCCCCTCTGAGCCAGACTCTGGCCAGGGACCT
CCTGCAGAGGAAGAAGAGGGAGAGGAAGAGGCTGCCAAGGAAGAGGCTGAAGCCCAGGGCGTCAGAGATC
ATGAGAGCCTGTAG

Translation (237 aa):
MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESK
EKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCAAEPEVEPEAHEGDGDKKGSAEGSSDEEGKLV
IDEPAKEKNEKGTLKRRAGDVLEDSPKRPKESGDHEEEDKEIAALEGERPLPVEVEKNSTPSEPDSGQGP
PAEEEEGEEEAAKEEAEAQGVRDHESL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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