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Report for CCDS21863.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21863.1 Public Mus musculus 7 Sephs2 23 108 98 CCDS HistoryNCBI Gene:20768Re-query CCDS DB by CCDS ID:21863.1Re-query CCDS DB by GeneID:20768See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 21863.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082428.4 ENSMUSP00000081009.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082428.4Link to Ensembl Protein Viewer:ENSMUSP00000081009.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000082428Re-query CCDS DB by Protein ID:ENSMUSP00000081009
Original member Current member NCBI NM_009266.3 NP_033292.2 Accepted alive Link to Nucleotide Sequence:NM_009266.3Link to Protein Sequence:NP_033292.2Re-query CCDS DB by Nucleotide ID:NM_009266Re-query CCDS DB by Protein ID:NP_033292Link to BLAST:NP_033292.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033292.2 452 P97364 452 100% 0 0

Chromosomal Locations for CCDS 21863.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127272561 127273919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 63

Nucleotide Sequence (1359 nt):
ATGGCGGAAGCGGCGGCGGCGGGCGCCAGCGGAGAAACCATGGCGGCGCTAGTGGCCGCAGAAGGTTCCT
TGGGCCCGGCGGGCTGGTCTGCCGGCCGGAGTTTCTCCAACTACCGGCCGTTCGAGCCCCAGACACTGGG
CTTCAGCCCGAGCTGGCGGCTGACGAGCTTCTCCGGCATGAAGGGCTGAGGCTGCAAGGTCCCCCAGGAG
ACCCTGCTCAAACTCCTGGAGGGACTGACGCGGCCCGCGCTGCAGCCCCCGCTTACCTCGGGTCTGGTCG
GGGGCCAGGAAGAGACGGTGCAGGAAGGGGGCCTGTCCACCAGGCCCGGCCCCGGCTCAGCCTTCCCCTC
GCTGAGCATTGGCATGGACTCCTGCGTCATCCCCCTGAGGCACGGAGGCCTGTCGCTGGTGCAGACCACC
GACTTCTTTTACCCCTTGGTGGAAGATCCCTATATGATGGGGCGCATAGCTTGTGCCAATGTGCTCAGTG
ACCTCTATGCCATGGGTATCACTGAGTGTGACAACATGTTGATGTTACTCAGTGTGAGCCAGAGCATGAG
TGAAAAGGAACGAGAGAAGGTGACACCGCTCATGATCAAAGGCTTTCGTGACGCTGCGGAGGAGGGAGGC
ACTGCAGTGACCGGTGGACAGACAGTGGTCAACCCGTGGATTATCATCGGTGGCGTTGCCACGGTGGTGT
GTCAGCAAAATGAATTCATAATGCCTGATAGTGCCGTGGTAGGAGATGTGCTGGTATTAACCAAACCTTT
AGGAACCCAGGTTGCTGCCAATGCCCACCAATGGCTGGATAATCCTGAGAAATGGAATAAAATCAAGATG
GTGGTTTCCAGAGAGGAAGTAGAGTTAGCCTATCAGGAAGCTATGTTCAATATGGCTACTCTAAACAGGA
CTGCTGCTGGCTTGATGCACACTTTTAATGCCCACGCAGCCACGGATATCACAGGCTTTGGCATATTAGG
ACACTCTCAGAACCTGGCAAAACAGCAAAAAAATGAAGTGTCCTTTGTCATACATAATCTGCCAATAATT
GCCAAGATGGCTGCGATCAGCAAAGCCAGTGGGCGCTTTGGCCTCCTCCAAGGAACGTCAGCTGAAACCT
CTGGGGGATTACTGATTTGTCTGCCAAGAGAGCAGGCGGCCCGCTTTTGTTCGGAAATCAAATCTTCCAA
GTACGGAGAGGGTCACCAAGCTTGGATCGTTGGCATCGTGGAGAAGGGAAACCGGACAGCCCGGATCATT
GACAAGCCTCGCGTTATTGAAGTTCTACCTCGGGGAGCCTCTGCTGCTGCTGCTGCTGCTCCTGATAATT
CCAACGCAGCCTCTGAGCCTAGTTCTTGA

Translation (452 aa):
MAEAAAAGASGETMAALVAAEGSLGPAGWSAGRSFSNYRPFEPQTLGFSPSWRLTSFSGMKGUGCKVPQE
TLLKLLEGLTRPALQPPLTSGLVGGQEETVQEGGLSTRPGPGSAFPSLSIGMDSCVIPLRHGGLSLVQTT
DFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMSEKEREKVTPLMIKGFRDAAEEGG
TAVTGGQTVVNPWIIIGGVATVVCQQNEFIMPDSAVVGDVLVLTKPLGTQVAANAHQWLDNPEKWNKIKM
VVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQKNEVSFVIHNLPII
AKMAAISKASGRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARII
DKPRVIEVLPRGASAAAAAAPDNSNAASEPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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