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Report for CCDS37127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37127.1 Public Mus musculus 15 Apol7c 23 108 98 CCDS HistoryNCBI Gene:108956Re-query CCDS DB by CCDS ID:37127.1Re-query CCDS DB by GeneID:108956See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37127.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062562.6 ENSMUSP00000050745.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062562.6Link to Ensembl Protein Viewer:ENSMUSP00000050745.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000062562Re-query CCDS DB by Protein ID:ENSMUSP00000050745
Original member Current member NCBI NM_175391.4 NP_780600.1 Accepted alive Link to Nucleotide Sequence:NM_175391.4Link to Protein Sequence:NP_780600.1Re-query CCDS DB by Nucleotide ID:NM_175391Re-query CCDS DB by Protein ID:NP_780600Link to BLAST:NP_780600.1

Chromosomal Locations for CCDS 37127.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77525635 77526499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77528804 77528908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77529991 77530117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77530410 77530422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGAGCACCCCAGAGAGAAAGCGCTTCATTCCCACTGTGGCTCAGCACCTCCTGGACAGGAAGAGCCTAG
AGGTCCTGCAGCTCCTGCTGACTGAAGAGGAAACCTGGAAACAGTTTGTGGCAGAAGTTGATTTGTCCAG
GGAAGAGGAAGCTGCCTTGCGAGAGTCTCTTGCTGAGATCTTTGCAGATCCTGATGGAGAAGATGAAGAT
GAACTCCAAATTGACCTGCAGGACAAGAACGAGAGGAAAGAGGAAGATGCCTTGAGTGAAGCCCTGACTG
AGACCATAGCTGATACTGATGCAGAAGATGAAGAGGAGATCCAAAATGACCTGTGGCACAAGGAAAGGTT
CTTGGATGCTTATCCTTGGGTGAAACTGGAGATTGAGGAGAGCATCAGGAAGCTCCACGCCCTGGCAGAC
AAGGTTGACAAGGTGCACAGGGACTGCACCATCTCACGGGTGGTGGCCAGCTCCAGCAGTGCTGTGTCTG
GAGTCCTGACCATCCTTGGTCTGGCTCTGGCACCTGTGACAGCAGGAGTCAGTCTGGCACTGTCAGCCAC
TGGCTTGGGGCTGGGGGCAGCAGCCACTGTGACTAGTGTTTCCACAAGCATTGTGGAAAAGGTAAGTGTG
GTGTCTGCTGAAGCTAAAGCCAGGAACCTGGTGCCAACCAACAAAGACACAATGAAGGGCATAATAGAAG
TTTTGGATCAGAGTGGCCCCAGACTTATTTCTGGATCTACAAATACCATCCAGAATATACAAGGCATCCA
AAAATGTATTAATGCCATTCAGTTGTCCAAAGCCAACACTCGCCTAGCAAATGATGCCAGGCGTCTCATG
ACCACAGGAAAGACATCAACCCAAACCACTAAACAGGTGCAGAAAGCCTTTGGAGGTACCACTCTGGCAA
TGACCAAAGGAGTCCGAATCATGGGTGCAGCCACCACAGGTTTCTTCCTCCTGCTGGATGTGATCAGCCT
TGTGGAAGACTCGAAGCATTTGCATGAGGGTGCTAAGTCACAGACTGCTGCAGAGCTTCAGCAGCAAGCT
TGGAACCTGGAGCTGAAGTTACAGGAGCTCAAAGAGGTTCACAACAGCCTGACTCAGTGA

Translation (369 aa):
MSTPERKRFIPTVAQHLLDRKSLEVLQLLLTEEETWKQFVAEVDLSREEEAALRESLAEIFADPDGEDED
ELQIDLQDKNERKEEDALSEALTETIADTDAEDEEEIQNDLWHKERFLDAYPWVKLEIEESIRKLHALAD
KVDKVHRDCTISRVVASSSSAVSGVLTILGLALAPVTAGVSLALSATGLGLGAAATVTSVSTSIVEKVSV
VSAEAKARNLVPTNKDTMKGIIEVLDQSGPRLISGSTNTIQNIQGIQKCINAIQLSKANTRLANDARRLM
TTGKTSTQTTKQVQKAFGGTTLAMTKGVRIMGAATTGFFLLLDVISLVEDSKHLHEGAKSQTAAELQQQA
WNLELKLQELKEVHNSLTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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