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Report for CCDS29178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29178.1 Public Mus musculus 18 Pcdhb11 23 108 98 CCDS HistoryNCBI Gene:93882Re-query CCDS DB by CCDS ID:29178.1Re-query CCDS DB by GeneID:93882See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29178.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053073.5 ENSMUSP00000056148.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053073.5Link to Ensembl Protein Viewer:ENSMUSP00000056148.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053073Re-query CCDS DB by Protein ID:ENSMUSP00000056148
Original member Current member NCBI NM_053136.3 NP_444366.3 Accepted alive Link to Nucleotide Sequence:NM_053136.3Link to Protein Sequence:NP_444366.3Re-query CCDS DB by Nucleotide ID:NM_053136Re-query CCDS DB by Protein ID:NP_444366Link to BLAST:NP_444366.3

Chromosomal Locations for CCDS 29178.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37421619 37424012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2394 nt):
ATGGAGACAGCGCTAGCAAAAATGCCAGAGCAAAGGCAAGTCTTTTTTCTTACTATCTTGTTGCTGTTGT
GGAAGTCTGGCTCTGGGGCAACTAGATATTCCATGCCAGAAGAAAAGGAGAGTGGCTATTTGGTGGCAAA
CGTGGCAAAAGATCTGGGGCTCAGGGTTGGAGAACTGGCCACTAGAGGAGCTCAAATCCATTACAAAGGA
AACAAAGAGCTCTTGCAGATGGATGCAGAGACTGGGAATTTGTTCTTAAAGGAAAAACTAGACCGGGAGG
CACTGTGTGGGGCGACAGAACCCTGTGTGCTGCACTTCCAGGTCATACTGGAAAACCCTGTGCAGTTCTT
CCAAACTGAACTGCAGCTCACTGATATAAACGACCACTCTCCAGAGTTCCCTGACAGGGAAATGCTTCTA
AAAATCCCTGAGAACGCCCAGCCAGGAACTGTGTTTCCTCTGAAGGCAGCCCAGGACTCTGACATAGGGA
GCAATGCCGTTCAGAACTACACAGTCAGTCCCAACATCCATTTCCACGTCATTACTCACAGTCGCTCAGA
TGGCAGGAAATACCCAGAGCTGGTGCTGGACAGAGCCCTGGACAGGGAGGAGCAGCCTGAGCTCACTTTA
ATCCTCACCGCTCTGGATGGGGGTGCTCCGCCTCGGTCAGGAACCACTATAGTTCACATTGAAGTCGTGG
ACATCAATGATAACGCCCCCCAGTTTATACAGTCACTCTATGAGGTGCAGATTCTCGAAAATAGCCCCAT
TGATACCTTAGTTGTTACAGTCTCTGCCAGGGATTTAGATTCTGGGATATATGGCAATGTAGCCTATTCT
CTGTTTCAGGGTGATGGATTATCTCAACCATTTGTAATAGATGAAGTCACAGGAGAAATCCGTCTTAGCA
AAGAGCTGGATTTCGAGGGAATTAGCCATTATAACATAGAAATCGCAGCCACTGATGGGGGAGACCTTTT
AGGAAAATGCACTGTGGTTATACAGGTGTTGGATGTGAATGACAACGCTCCAGAGTTGATGATCAGGAAG
CTCACAGTCCCTGTCCCGGAAAATTCCGCCGAGACTGTAGTTGCTGTTTTTAGTGTTTCTGATTCTGATT
CGGGGGACAACGGAAGGATAGTGTGTTCTATCCAGAACAATATTCCATTTCTCCTGAAACCCACGTTTGA
GAATTACTACACCTTAGTGACCGAGGGGCCACTTGATAGAGAGAGCAGAGCTGAGTACAATATCACCATC
ACTGTCTGGGATTTGGGCACACCCAGGCTCACAACCCAGCACACCATAACAGTGCAGGTGTCTGACATCA
ACGACAACGCCCCTGCCTTCACACAAACCTCCTATACCCTGTTTGTGCAAGAGAACAACAGTCCCGCCCT
GCAGATAGGCACCATCAGCGCCACAGACTCAGACTCAGGCTCCAATGCCCACATCACCTACTCGCTGCTG
CTGCCCCAAGACCCACAGCTGGCCCTTGCCTCGCTAATCTCCATTAACCCCGACAACGGGCAGCTGTTCG
TACTCAGGGCACTGGACTATGAATCCCTGCAGGCCTTCGAGTTCCGCGTAGGCGCCACAGACCAAGGCTC
TCCTGCACTCAGCAGCCAGACTCTGGTGCGCGTGGTGGTGCTGGATGACAATGACAATGCGCCCTTCGTG
CTCTACCCGATGCAGAACGCCTCTGCGCCTTGCACAGAGCTGCTGCCCAGGGAGGCGGAGTCTGGCTACC
TGGTCACCAAGGTGGTGGCTGTGGATCGCGACTCTGGCCAGAATGCTTGGCTGTCGTTCCAGTTGCTCAA
GGCCACGGAGCCCGGGCTGTTCAGCGTGTGGGCGCACAATGGCGAGGTGCGCACCACCAGGCTGCTGAGC
GAGCGCGATGTGCCCAAGCACAGGCTGCTGCTGCTGGTCAAGGACAATGGCGAGCCTCAGCTCTCTGCCA
GTGTCACACTTCAAGTGCTACTGGTGAATAGTTTTTCTCAGCCCTACCTTTCTCTGCCTGAGGTGGCACA
GGACCCCATTCAGGAGGATGGAGAGATGCTCACTCTGTACCTGGTCATTGCCTTGGCTTCCGTGTCTTCG
CTCTTCCTCTTGTCTGTCCTTATGTTTGTGGGAATGAGGTTGTGCAGGAGGGCCAGGGAGGCTTCTCTGG
GTGTCTGCTCTGTGCCTGAGGGCCACTTCCCTGGCCACCTGATGGATGTTAGCGGAACTGGGACTCTGTC
CCACAGCTATCAGTATGATGTGTGTCTATCAGGAGACTCTAGGACTGGTGAGTTTAAATTCCTCAAACCC
ATGATTCCCAATGTAATGGTCCAGGAGGCTGGGAGAGAAGTGAAGGAAAATCCCCCCTGCAGGGATAGCT
TTGTATTCAGTTAA

Translation (797 aa):
METALAKMPEQRQVFFLTILLLLWKSGSGATRYSMPEEKESGYLVANVAKDLGLRVGELATRGAQIHYKG
NKELLQMDAETGNLFLKEKLDREALCGATEPCVLHFQVILENPVQFFQTELQLTDINDHSPEFPDREMLL
KIPENAQPGTVFPLKAAQDSDIGSNAVQNYTVSPNIHFHVITHSRSDGRKYPELVLDRALDREEQPELTL
ILTALDGGAPPRSGTTIVHIEVVDINDNAPQFIQSLYEVQILENSPIDTLVVTVSARDLDSGIYGNVAYS
LFQGDGLSQPFVIDEVTGEIRLSKELDFEGISHYNIEIAATDGGDLLGKCTVVIQVLDVNDNAPELMIRK
LTVPVPENSAETVVAVFSVSDSDSGDNGRIVCSIQNNIPFLLKPTFENYYTLVTEGPLDRESRAEYNITI
TVWDLGTPRLTTQHTITVQVSDINDNAPAFTQTSYTLFVQENNSPALQIGTISATDSDSGSNAHITYSLL
LPQDPQLALASLISINPDNGQLFVLRALDYESLQAFEFRVGATDQGSPALSSQTLVRVVVLDDNDNAPFV
LYPMQNASAPCTELLPREAESGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLLS
ERDVPKHRLLLLVKDNGEPQLSASVTLQVLLVNSFSQPYLSLPEVAQDPIQEDGEMLTLYLVIALASVSS
LFLLSVLMFVGMRLCRRAREASLGVCSVPEGHFPGHLMDVSGTGTLSHSYQYDVCLSGDSRTGEFKFLKP
MIPNVMVQEAGREVKENPPCRDSFVFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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