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Report for CCDS36537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36537.1 Public Mus musculus 12 Serpina3k 23 108 98 CCDS HistoryNCBI Gene:20714Re-query CCDS DB by CCDS ID:36537.1Re-query CCDS DB by GeneID:20714See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36537.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043058.4 ENSMUSP00000042095.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043058.4Link to Ensembl Protein Viewer:ENSMUSP00000042095.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000043058Re-query CCDS DB by Protein ID:ENSMUSP00000042095
Original member Current member NCBI NM_011458.2 NP_035588.2 Accepted alive Link to Nucleotide Sequence:NM_011458.2Link to Protein Sequence:NP_035588.2Re-query CCDS DB by Nucleotide ID:NM_011458Re-query CCDS DB by Protein ID:NP_035588Link to BLAST:NP_035588.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035588.2 418 P07759 418 97.1292% 0 12

Chromosomal Locations for CCDS 36537.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 104340511 104341150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104342939 104343212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104344127 104344280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104345233 104345421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGCCTTCATTGTAGCTATGGGGATGATTTTAATGGCTGGAATCTGTCCTGCTGTCCTATGCTTCCCAG
ATGGCACAAAGGAAATGGACATTGTATTCCATGAACACCAAGACAATGGGACACAAGATGACAGTCTCAC
ATTGGCCTCCGTCAACACTGACTTTGCCTTCAGTCTGTACAAGAAGCTGGCTTTGAAGAATCAAGATAAA
AATATTGTCTTCTCCCCACTTAGCATCTCAGCTGCCTTGGCCCTCGTGTCCCTGGGAGCAAAGGGCAAGA
CCATGGAAGAGATTTTAGAAGGCCTCAAGTTCAATCTCACAGAGACCCCTGAAGCAGACATCCACCAGGG
CTTTGGCAACCTCCTACAGAGTCTCAGCCAGCCAGAAGACCAGGATCAGATAAACATAGGCAATGCCATG
TTTATTGAAAAGGACCTGCAGATCCTGGCAGAATTCCATGAGAAGACAAGGGCTCTGTACCAGACTGAGG
CCTTCACAGCAGACTTCCAGCAGCCTACTGAGGCCAAAAACCTCATCAATGACTATGTGAGCAATCAGAC
CCAGGGGATGATCAAGAAACTGATCTCAGAACTGGATGATGGGACATTGATGGTGCTGGTGAATTACATC
TACTTTAAAGGCAAATGGAAGATATCCTTTGACCCCCAGGACACATTTGAGTCTGAGTTCTACTTGGATG
AGAAGAGATCTGTGAAGGTTCCCATGATGAAAATGAAGTTACTGACTGCACGCCACTTCCGTGATGAGGA
GCTATCGTGCTCTGTGTTGGAGCTGAAGTACACAGGAAATGCCAGTGCCCTGCTCATCCTCCCTGACCAA
GGCAGGATGCAGCAGGTGGAAGCCAGCTTACAACCAGAGACCCTGAGGAAATGGAGGAAAACTTTGTTTT
CCAGCCAAATAGAGGAGCTAAACCTGCCCAAGTTCTCCATCGCTAGTGACTACAGGCTGGAAGAGGATGT
CCTTCCAGAAATGGGGATTAAGGAAGTCTTCACAGAACAAGCTGACCTATCTGGGATCACAGAAGCCAAG
AAACTGAGTGTGTCTCAGGTGGTCCACAAGGCTGTGCTGGATGTGGCTGAGACAGGCACAGAAGCAGCTG
CTGCCACAGGGGTTATTGGTGGCATTCGTAAGGCCGTATTACCAGCTGTGTGTTTCAACAGGCCATTCCT
GATTGTTATCTATCACACAAGTGCTCAGAGTATCCTCTTTATGGCCAAAGTCAATAACCCCAAGTAG

Translation (418 aa):
MAFIVAMGMILMAGICPAVLCFPDGTKEMDIVFHEHQDNGTQDDSLTLASVNTDFAFSLYKKLALKNQDK
NIVFSPLSISAALALVSLGAKGKTMEEILEGLKFNLTETPEADIHQGFGNLLQSLSQPEDQDQINIGNAM
FIEKDLQILAEFHEKTRALYQTEAFTADFQQPTEAKNLINDYVSNQTQGMIKKLISELDDGTLMVLVNYI
YFKGKWKISFDPQDTFESEFYLDEKRSVKVPMMKMKLLTARHFRDEELSCSVLELKYTGNASALLILPDQ
GRMQQVEASLQPETLRKWRKTLFSSQIEELNLPKFSIASDYRLEEDVLPEMGIKEVFTEQADLSGITEAK
KLSVSQVVHKAVLDVAETGTEAAAATGVIGGIRKAVLPAVCFNRPFLIVIYHTSAQSILFMAKVNNPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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