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Report for CCDS40602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40602.1 Public Mus musculus 9 Arcn1 23 108 98 CCDS HistoryNCBI Gene:213827Re-query CCDS DB by CCDS ID:40602.1Re-query CCDS DB by GeneID:213827See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40602.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034607.9 ENSMUSP00000034607.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034607.9Link to Ensembl Protein Viewer:ENSMUSP00000034607.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000034607Re-query CCDS DB by Protein ID:ENSMUSP00000034607
Original member Current member NCBI NM_145985.4 NP_666097.3 Accepted alive Link to Nucleotide Sequence:NM_145985.4Link to Protein Sequence:NP_666097.3Re-query CCDS DB by Nucleotide ID:NM_145985Re-query CCDS DB by Protein ID:NP_666097Link to BLAST:NP_666097.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666097.3 511 Q5XJY5 511 100% 0 0

Chromosomal Locations for CCDS 40602.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44743927 44744016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44745418 44745622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44750325 44750433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44751216 44751363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44752110 44752275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44757120 44757284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44758561 44758766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44758881 44759060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44759962 44760225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44767670 44767672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGGTGCTGTTGGCAGCAGCAGTCTGCACGAAAGCGGGAAAGGCTATTGTTTCTCGACAGTTCGTGGAGA
TGACCCGAACTCGGATTGAAGGCTTATTAGCAGCTTTCCCAAAACTCATGAACACTGGAAAACAACATAC
TTTTGTTGAAACAGAGAGTGTAAGATATGTGTACCAACCTATGGAGAAACTGTACATGGTATTGATCACT
ACAAAGAACAGCAATATCTTAGAAGATTTGGAGACTTTAAGGCTCTTCTCAAGGGTGATCCCTGAATATT
GCCGAGCCTTAGAGGAAAATGAAATATCTGAGCACTGTTTTGATTTGATTTTTGCTTTTGATGAAATTGT
TGCCCTGGGATACCGGGAGAATGTTAACCTGGCACAGATCAGAACCTTTACAGAAATGGACTCTCACGAG
GAGAAAGTATTCCGAGCAGTCAGAGAGACTCAAGAACGTGAGGCTAAGGCTGAGATGCGGCGTAAAGCAA
AGGAATTACAACAGGCCCGAAGAGATGCAGAGAGACAGGGGAAAAAAGCACCAGGATTTGGCGGATTTGG
TAGTTCTGCAGTGTCTGGAGGCAGCACAGCAGCCATGATCACAGAGACTATCATTGAAACTGATAAACCA
AAAGTGGCGCCTGCACCAGCCAGACCTTCAGGCCCCAGCAAGGCTTTGAAACTTGGAGCTAAAGGAAAGG
AAGTAGATAACTTTGTGGACAAATTGAAATCTGAAGGTGAAACTATTATGTCTTCTAATATGGGAAAACG
TACCTCAGAAGCAACCAAAGTGCATGCTCCACCTATTAATATGGAAAGTGTGCACATGAAGATTGAAGAG
AAGATCACACTAACCTGTGGGAGAGATGGAGGATTACAGAATATGGAGTTGCATGGCATGATCATGCTTA
GGATCTCAGATGACAAATTTGGCCGGATTCGTCTTCATGTAGAAAATGAAGATAAGAAAGGGGTGCAGCT
ACAGACGCATCCAAATGTGGATAAAAAACTTTTTACTGCAGAGTCTCTCATTGGCTTGAAAAACCCAGAG
AAGTCATTTCCAGTCAACAGTGATGTAGGGGTACTAAAGTGGAGACTACAAACAACAGAGGAATCTTTTA
TTCCGTTGACAATTAATTGCTGGCCTTCGGAAAGTGGAAATGGCTGTGATGTCAACATAGAGTACGAACT
ACAGGAAGATAATTTAGAGCTCAATGATGTGGTCATCACTATCCCACTCCCATCGGGTGTTGGCGCGCCT
GTGATTGGTGAGATCGATGGGGAATATCGACATGACAGTCGGAGAAATACGTTGGAGTGGTGCCTGCCAG
TGATTGATGCCAAAAATAAGAGTGGCAGCCTGGAGTTCAGCATTCCTGGGCAGCCTAATGACTTCTTCCC
TGTTCAAGTTTCTTTCATCTCCAAAAAGAATTACTGCAACATACAGGTTACCAAAGTGACCCAGGTGGAT
GGAAACAGCCCCGTCAGGTTTTCCACGGAGACCACTTTCTTAGTGGACAAATACGAAATCCTGTAA

Translation (511 aa):
MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLIT
TKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHE
EKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPGFGGFGSSAVSGGSTAAMITETIIETDKP
KVAPAPARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSNMGKRTSEATKVHAPPINMESVHMKIEE
KITLTCGRDGGLQNMELHGMIMLRISDDKFGRIRLHVENEDKKGVQLQTHPNVDKKLFTAESLIGLKNPE
KSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVITIPLPSGVGAP
VIGEIDGEYRHDSRRNTLEWCLPVIDAKNKSGSLEFSIPGQPNDFFPVQVSFISKKNYCNIQVTKVTQVD
GNSPVRFSTETTFLVDKYEIL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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