CCDS Report for Consensus CDS

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Report for CCDS46952.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
46952.1	Public	Homo sapiens	3	PHC3	24	110	108

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46952.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000495893.7	ENSP00000420294.1	MANE Select	Accepted	alive
		NCBI	NM_024947.4	NP_079223.3	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_079223.3	995	Q8NDX5-7	995	100%	0	0

Chromosomal Locations for CCDS 46952.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)

Genome Browser links:

Chromosome	Start	Stop
3	170097230	170097384
3	170102479	170102710
3	170102802	170102934
3	170106832	170106946
3	170113360	170113519
3	170117226	170117476
3	170122591	170122744
3	170128684	170129552
3	170136419	170136665
3	170145423	170145521
3	170149086	170149244
3	170171373	170171450
3	170172557	170172712
3	170178773	170178938
3	170181702	170181715

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2988 nt):
ATGGCGGAAGCGGAATTTAAGGACCATAGTACAGCTATGGATACTGAACCAAACCCGGGAACATCTTCTG TGTCAACAACAACCAGCAGTACCACCACCACCACCATCACCACTTCCTCCTCTCGAATGCAGCAGCCACA GATCTCTGTCTACAGTGGTTCAGACCGACATGCTGTACAGGTAATTCAACAGGCATTGCATCGGCCCCCC AGCTCAGCTGCTCAGTACCTTCAGCAAATGTATGCAGCCCAACAACAGCACTTGATGCTGCATACTGCAG CTCTTCAGCAGCAGCATTTAAGCAGCTCCCAGCTTCAGAGCCTTGCTGCTGTTCAGGCAAGTTTGTCCAG TGGAAGACCATCTACATCTCCCACAGGAAGTGTCACACAGCAGTCAAGTATGTCCCAAACGTCTATCAAC CTCTCCACTTCTCCTACACCTGCACAGTTAATAAGCCGTTCCCAGGCTTCCAGTTCTACCAGCGGCAGTA TTACCCAACAGACTATGTTACTAGGGAGTACTTCCCCTACCCTAACGGCAAGCCAAGCTCAAATGTATCT CCGAGCTCAAATGCTGATTTTCACACCCGCTACCACTGTGGCTGCTGTACAGTCTGACATTCCTGTTGTC TCGTCGTCATCGTCATCTTCCTGTCAGTCTGCAGCTACTCAGGTTCAGAATTTAACATTACGCAGCCAGA AGTTGGGTGTATTATCTAGCTCACAGAATGGTCCACCAAAAAGCACTAGTCAAACTCAGTCATTGACAAT TTGTCATAACAAAACAACAGTGACCAGTTCTAAAATCAGCCAACGAGATCCTTCTCCAGAAAGTAATAAG AAAGGAGAGAGCCCAAGCCTGGAATCACGAAGCACAGCTGTCACCCGGACATCAAGTATTCACCAGTTAA TAGCACCAGCTTCATATTCTCCAATTCAGCCTCATTCTCTAATAAAACATCAGCAGATTCCTCTTCATTC ACCACCTTCCAAAGTTTCCCATCATCAGCTGATATTACAACAGCAGCAACAGCAAATTCAGCCAATCACA CTTCAGAATTCAACTCAAGACCCACCCCCATCCCAGCACTGTATACCACTCCAGAACCATGGCCTTCCTC CAGCTCCCAGTAATGCCCAGTCACAGCATTGTTCACCGATTCAGAGTCATCCCTCTCCTTTAACAGTGTC TCCTAATCAGTCACAGTCAGCACAGCAGTCTGTAGTGGTGTCTCCTCCACCACCTCATTCACCAAGTCAG TCTCCTACTATAATTATTCATCCACAAGCACTTATTCAGCCACACCCTCTTGTGTCATCAGCTCTCCAGC CAGGGCCAAATTTGCAGCAGTCCACTGCTAATCAGGTGCAAGCTACAGCACAGTTGAATCTTCCATCCCA TCTTCCACTTCCAGCTTCCCCTGTTGTACACATTGGCCCAGTTCAGCAGTCTGCCTTGGTATCCCCAGGC CAGCAGATTGTCTCTCCATCACACCAGCAATATTCATCCCTGCAGTCCTCTCCAATCCCAATTGCAAGTC CTCCACAGATGTCGACATCTCCTCCAGCTCAGATTCCACCACTGCCCTTGCAGTCTATGCAGTCTTTACA AGTGCAGCCTGAAATTCTGTCCCAGGGCCAGGTTTTGGTGCAGAATGCTTTGGTGTCAGAAGAGGAACTT CCAGCTGCAGAAGCTTTGGTCCAGTTGCCATTTCAGACTCTTCCTCCTCCACAGACTGTTGCGGTAAACC TACAAGTGCAACCACCAGCACCTGTTGATCCACCAGTGGTTTATCAGGTAGAAGATGTGTGTGAAGAAGA AATGCCAGAAGAGTCAGATGAATGTGTCCGGATGGATAGAACCCCACCACCACCCACTTTGTCTCCAGCA GCTATAACAGTGGGGAGAGGAGAAGATTTGACTTCTGAACATCCTTTGTTAGAGCAAGTGGAATTACCTG CTGTGGCATCAGTCAGTGCTTCAGTAATTAAATCTCCATCAGATCCCTCACATGTTTCTGTTCCACCACC TCCATTGTTACTTCCAGCTGCCACCACAAGGAGTAACAGTACATCTATGCACAGTAGCATTCCCAGTATA GAGAACAAACCTCCACAGGCTATTGTTAAACCACAGATCCTAACCCATGTTATTGAAGGCTTTGTGATTC AGGAGGGATTGGAGCCATTTCCTGTGAGTCGTTCCTCTTTGCTAATAGAACAGCCTGTGAAAAAACGGCC TCTTTTGGATAATCAGGTGATAAATTCAGTGTGTGTTCAGCCAGAGCTACAGAATAATACAAAACATGCG GATAATTCATCTGACACAGAGATGGAAGACATGATTGCTGAAGAGACATTAGAAGAAATGGACAGTGAGT TGCTCAAGTGTGAATTCTGTGGGAAAATGGGATATGCTAATGAATTTTTGCGGTCAAAACGATTCTGCAC TATGTCATGTGCCAAAAGGTACAATGTTAGCTGTTCTAAAAAATTTGCACTTAGTCGTTGGAATCGTAAG CCTGATAATCAAAGTCTTGGGCATCGTGGCCGTCGTCCAAGTGGCCCTGATGGGGCAGCGAGAGAACATA TCCTTAGGCAGCTTCCAATTACTTATCCATCTGCAGAAGAAGACTTGGCTTCTCATGAAGATTCTGTGCC ATCTGCTATGACAACTCGTCTGCGCAGGCAGAGCGAGCGGGAAAGAGAACGTGAGCTTCGGGATGTGAGA ATTCGGAAAATGCCTGAGAACAGTGACTTGCTACCAGTTGCACAAACAGAGCCATCTATATGGACAGTTG ATGATGTCTGGGCCTTCATCCATTCTTTGCCTGGCTGCCAGGATATCGCAGATGAATTCAGAGCACAGGA GATTGATGGACAGGCCCTTCTCTTGCTGAAAGAAGACCATCTCATGAGTGCAATGAATATCAAGCTAGGC CCAGCCCTGAAGATCTGTGCACGCATCAACTCTCTGAAGGAATCTTAA
Translation (995 aa):
MAEAEFKDHSTAMDTEPNPGTSSVSTTTSSTTTTTITTSSSRMQQPQISVYSGSDRHAVQVIQQALHRPP SSAAQYLQQMYAAQQQHLMLHTAALQQQHLSSSQLQSLAAVQASLSSGRPSTSPTGSVTQQSSMSQTSIN LSTSPTPAQLISRSQASSSTSGSITQQTMLLGSTSPTLTASQAQMYLRAQMLIFTPATTVAAVQSDIPVV SSSSSSSCQSAATQVQNLTLRSQKLGVLSSSQNGPPKSTSQTQSLTICHNKTTVTSSKISQRDPSPESNK KGESPSLESRSTAVTRTSSIHQLIAPASYSPIQPHSLIKHQQIPLHSPPSKVSHHQLILQQQQQQIQPIT LQNSTQDPPPSQHCIPLQNHGLPPAPSNAQSQHCSPIQSHPSPLTVSPNQSQSAQQSVVVSPPPPHSPSQ SPTIIIHPQALIQPHPLVSSALQPGPNLQQSTANQVQATAQLNLPSHLPLPASPVVHIGPVQQSALVSPG QQIVSPSHQQYSSLQSSPIPIASPPQMSTSPPAQIPPLPLQSMQSLQVQPEILSQGQVLVQNALVSEEEL PAAEALVQLPFQTLPPPQTVAVNLQVQPPAPVDPPVVYQVEDVCEEEMPEESDECVRMDRTPPPPTLSPA AITVGRGEDLTSEHPLLEQVELPAVASVSASVIKSPSDPSHVSVPPPPLLLPAATTRSNSTSMHSSIPSI ENKPPQAIVKPQILTHVIEGFVIQEGLEPFPVSRSSLLIEQPVKKRPLLDNQVINSVCVQPELQNNTKHA DNSSDTEMEDMIAEETLEEMDSELLKCEFCGKMGYANEFLRSKRFCTMSCAKRYNVSCSKKFALSRWNRK PDNQSLGHRGRRPSGPDGAAREHILRQLPITYPSAEEDLASHEDSVPSAMTTRLRRQSERERERELRDVR IRKMPENSDLLPVAQTEPSIWTVDDVWAFIHSLPGCQDIADEFRAQEIDGQALLLLKEDHLMSAMNIKLG PALKICARINSLKES

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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