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Report for CCDS26215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26215.1 Public Mus musculus 13 Calm4 23 108 98 CCDS HistoryNCBI Gene:80796Re-query CCDS DB by CCDS ID:26215.1Re-query CCDS DB by GeneID:80796See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042219.5 ENSMUSP00000041636.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042219.5Link to Ensembl Protein Viewer:ENSMUSP00000041636.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000042219Re-query CCDS DB by Protein ID:ENSMUSP00000041636
Original member Current member NCBI NM_020036.4 NP_064420.2 Accepted alive Link to Nucleotide Sequence:NM_020036.4Link to Protein Sequence:NP_064420.2Re-query CCDS DB by Nucleotide ID:NM_020036Re-query CCDS DB by Protein ID:NP_064420Link to BLAST:NP_064420.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064420.2 148 Q9JM83 148 100% 0 0

Chromosomal Locations for CCDS 26215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 3837896 3838342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGTCTCACGGGTTTACTAAGGAGGAGGTCGCTGAGTTCCAGGCAGCTTTCAATAGGTTTGACAAGAATA
AGGATGGCCATATCAGCGTCGAGGAACTTGGAGATGTAATGAAGCAGCTGGGCAAGAACCTCCCAGAGAA
GGACCTGAAGGCTCTCATCTCCAAGTTGGACACAGATGGTGATGGCAAGATCAGCTTTGAAGAATTCTTG
ACAGCCATAGAGAAGTACAAGAAAGGGCACAGAGCAGGGGAGCTGCGGGCTGTGTTCAATGTCCTTGACC
AGAATGGTGATGGCTACATCACTGTGGATGAGCTCAAGGAAAGCTTGTCCAAGTTAGGCGAGTCCCTTTC
CCAGGAGGAGCTGGAGGACATGATCCGTGTGGCTGACGTGGACCAAGATGGGAAGGTGAAATATGAGGAG
TTTGTGCGCCTCCACGTTGAAAATTGA

Translation (148 aa):
MSHGFTKEEVAEFQAAFNRFDKNKDGHISVEELGDVMKQLGKNLPEKDLKALISKLDTDGDGKISFEEFL
TAIEKYKKGHRAGELRAVFNVLDQNGDGYITVDELKESLSKLGESLSQEELEDMIRVADVDQDGKVKYEE
FVRLHVEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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