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Report for CCDS51907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51907.1 Public Mus musculus 6 C1s1 23 108 98 CCDS HistoryNCBI Gene:50908Re-query CCDS DB by CCDS ID:51907.1Re-query CCDS DB by GeneID:50908See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51907.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160505.7 ENSMUSP00000125531.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160505.7Link to Ensembl Protein Viewer:ENSMUSP00000125531.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160505Re-query CCDS DB by Protein ID:ENSMUSP00000125531
Original member Current member EBI ENSMUST00000162443.7 ENSMUSP00000125712.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162443.7Link to Ensembl Protein Viewer:ENSMUSP00000125712.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162443Re-query CCDS DB by Protein ID:ENSMUSP00000125712
Original member Current member NCBI NM_001097617.1 NP_001091086.1 Accepted alive Link to Nucleotide Sequence:NM_001097617.1Link to Protein Sequence:NP_001091086.1Re-query CCDS DB by Nucleotide ID:NM_001097617Re-query CCDS DB by Protein ID:NP_001091086Link to BLAST:NP_001091086.1
Original member Current member NCBI NM_144938.2 NP_659187.2 Accepted alive Link to Nucleotide Sequence:NM_144938.2Link to Protein Sequence:NP_659187.2Re-query CCDS DB by Nucleotide ID:NM_144938Re-query CCDS DB by Protein ID:NP_659187Link to BLAST:NP_659187.2

Chromosomal Locations for CCDS 51907.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124530944 124531740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124532541 124532615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124533274 124533402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124533896 124533974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124534358 124534473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124535233 124535386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124536332 124536531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124537361 124537486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124540321 124540498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124540789 124540996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124541333 124541355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2085 nt):
ATGGGCAAATCGCCAGGGATGTGGTGTTTGGTCCTGTTTTCTCTTTTGGCATCATTTTCTGCTGAGCCCA
CCATGCATGGGGAGATCCTGTCCCCTAATTATCCCCAGGCGTACCCCAATGACGTCGTGAAATCTTGGGA
CATTGAAGTCCCAGAGGGGTTTGGGATTCACCTTTACTTTACCCATGTGGACATAGAGCCGTCAGAGAGC
TGTGCATACGACTCAGTGCAGATAATCTCAGGAGACATCGAGGAAGGGAGACTCTGTGGCCAGAGGACCA
GCAAGAGCCCCAACTCCCCCATTATAGAAGAGTTTCAGTTCCCATACAATAAACTTCAGGTGGTCTTTAC
CTCAGACTTCTCCAACGAAGAACGGTTTACGGGCTTTGCAGCATACTACACTGCCATAGACATAAATGAA
TGCACAGATTTTACAGATGTCCCCTGTAGCCACTTCTGCAATAACTTCATTGGTGGATACTTCTGCTCCT
GTCCCCCAGAATACTTCCTCCACGATGACATGAGGAATTGTGGAGTCAACTGTAGTGGAGATGTGTTCAC
TGCCCTGATTGGGGAGATCTCAAGTCCCAATTATCCCAATCCATACCCGGAGAACTCAAGGTGTGAATAC
CAGATTCAGCTGCAGGAGGGCTTCCAAGTGGTGGTGACGATGCAGAGAGAAGATTTTGATGTGGAGCCCG
CTGACTCAGAGGGGAACTGCCCTGACAGTTTAACTTTTGCTTCAAAAAACCAACAGTTTGGTCCTTACTG
TGGTAATGGGTTCCCTGGACCGCTAACTATTAGAACCCAGAGCAATACTCTCGGCATTGTCTTTCAAACT
GACCTAATGGGGCAAAAGAAGGGTTGGAAGCTTCGTTACCATGGAGATCCCATCTCCTGTGCCAAAAAAA
TCACTGCCAATTCTACTTGGCAGCCCGATAAGGCAAAATACGTGTTTAAAGATGTGGTGAAGATAACCTG
TGTGGACGGATTTGAAGTTGTGGAGGGACATGTTAGCTCTACTTCATACTATTCCACTTGTCAAAGCGAT
GGACAGTGGAGCAACTCCGGTCTAAAATGTCAACCTGTGTATTGTGGAATTCCAGATCCCATTGCGAATG
GTAAAGTTGAAGAGCCAGAGAATAGTGTGTTTGGTACTGTTGTTCACTACACGTGTGAAGAGCCATATTA
CTACATGGAACATGAAGAAGGTGGGGAGTATCGATGTGCTGCAAATGGGAGATGGGTAAATGACCAGCTG
GGTATTGAGCTTCCAAGATGTATTCCAGCCTGTGGAGTACCCACCGAGCCCTTTCAAGTGCATCAGAGGA
TATTTGGAGGACAACCTGCAAAGATTGAAAATTTTCCCTGGCAAGTCTTCTTTAATCACCCCAGAGCTAG
TGGGGCTCTTATTAATGAGTACTGGGTGCTGACGGCTGCTCACGTTTTGGAGAAAATCTCCGACCCTTTA
ATGTATGTCGGGACCATGTCTGTGAGGACAACTCTCTTGGAAAATGCCCAGAGACTCTACAGTAAACGTG
TCTTTATTCATCCCAGCTGGAAGAAAGAAGATGACCCAAACACACGGACAAATTTTGACAATGACATTGC
CCTGGTGCAGCTGAAAGACCCTGTGAAAATGGGACCCAAAGTCTCCCCCATCTGCCTACCAGGCACCTCC
TCAGAGTACAACGTCTCACCGGGTGACATGGGGCTGATCTCAGGGTGGGGCAGTACAGAAAAGAAAGTCT
TTGTTATCAACCTCAGAGGGGCAAAGGTACCAGTAACCTCTTTAGAAACCTGCAAACAGGTGAAAGAGGA
GAACCCCACTGTAAGGCCTGAGGACTATGTTTTCACTGACAACATGATCTGTGCTGGCGAGAAAGGTGTT
GACAGCTGTCACGGGGACAGCGGCGGGGCTTTTGCTTTCCAGGTCCCCAATGTCACGGTCCCCAAATTCT
ATGTAGCTGGCTTGGTGTCTTGGGGGAAAAGGTGTGGGACTTATGGGGTCTACACAAAGGTAAAGAATTA
CGTGGACTGGATCCTGAAAACTATGCAGGAGAATAGTGGGCCCAGGAAGGACTAA

Translation (694 aa):
MGKSPGMWCLVLFSLLASFSAEPTMHGEILSPNYPQAYPNDVVKSWDIEVPEGFGIHLYFTHVDIEPSES
CAYDSVQIISGDIEEGRLCGQRTSKSPNSPIIEEFQFPYNKLQVVFTSDFSNEERFTGFAAYYTAIDINE
CTDFTDVPCSHFCNNFIGGYFCSCPPEYFLHDDMRNCGVNCSGDVFTALIGEISSPNYPNPYPENSRCEY
QIQLQEGFQVVVTMQREDFDVEPADSEGNCPDSLTFASKNQQFGPYCGNGFPGPLTIRTQSNTLGIVFQT
DLMGQKKGWKLRYHGDPISCAKKITANSTWQPDKAKYVFKDVVKITCVDGFEVVEGHVSSTSYYSTCQSD
GQWSNSGLKCQPVYCGIPDPIANGKVEEPENSVFGTVVHYTCEEPYYYMEHEEGGEYRCAANGRWVNDQL
GIELPRCIPACGVPTEPFQVHQRIFGGQPAKIENFPWQVFFNHPRASGALINEYWVLTAAHVLEKISDPL
MYVGTMSVRTTLLENAQRLYSKRVFIHPSWKKEDDPNTRTNFDNDIALVQLKDPVKMGPKVSPICLPGTS
SEYNVSPGDMGLISGWGSTEKKVFVINLRGAKVPVTSLETCKQVKEENPTVRPEDYVFTDNMICAGEKGV
DSCHGDSGGAFAFQVPNVTVPKFYVAGLVSWGKRCGTYGVYTKVKNYVDWILKTMQENSGPRKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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