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Report for CCDS20192.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20192.1 Public Mus musculus 6 Vmn1r27 23 108 98 CCDS HistoryNCBI Gene:171206Re-query CCDS DB by CCDS ID:20192.1Re-query CCDS DB by GeneID:171206See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20192.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095862.1 ENSMUSP00000093547.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095862.1Link to Ensembl Protein Viewer:ENSMUSP00000093547.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000095862Re-query CCDS DB by Protein ID:ENSMUSP00000093547
Original member Current member EBI ENSMUST00000228530.1 ENSMUSP00000154236.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228530.1Link to Ensembl Protein Viewer:ENSMUSP00000154236.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228530Re-query CCDS DB by Protein ID:ENSMUSP00000154236
Original member Current member NCBI NM_134436.2 NP_602318.2 Accepted alive Link to Nucleotide Sequence:NM_134436.2Link to Protein Sequence:NP_602318.2Re-query CCDS DB by Nucleotide ID:NM_134436Re-query CCDS DB by Protein ID:NP_602318Link to BLAST:NP_602318.2

Chromosomal Locations for CCDS 20192.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 58215106 58216017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGTTCTCACTCAAGAATGTCCTTTATTTCCAAGCTGGACTTGGAGTCCTAGCAAATATGTCTCTTCTTT
GCTTCTATATTTTCATAATTGTAGGTCACAGACCTAAGCCCACAGACTTGATCTCCTGTCAGCTGACCTT
CATTCATATAATGGTGTGCCTCACTGGAGGGGACCTGTTGCTTACAGACATATTTGAGTCACTGAATATT
AATAATGACTTCAAATGTAAGGCAACTTTTTACATAAGCAGGGTGATGAGATGCCTCTCTATCTGCACCA
CCTGCCTCCTGAGTGTGTTCCAGGCTGTCACAATCACTCCCAGTACTTCTTGTTTGGCAAAATTTAAACA
GAAACTAAGAAAATACATGGTCTATGTTTTCTTATGTATTTGGTCTTTCAGTTTTTCATACAGTAGTAGC
CGGATCTTCTATGTTCGTGGTTTTACTAATGTGAGTGAGACTAACCAGATGCAGATCACTAAATCCTGCT
TACTCTTCCGCATGAACTCCATCATCAGGGTATTCATTTTTACAGTGACAACCTCCAGAGATGTATTTCT
TGTAGGAATGATGCTAACCACAAGTACATACATGGTGATTATCTTGTATAGACATCAGAGGCAGTGCAAG
CACCTTCATAGCATCAAGCACCTGAGAGCATCCCCTGAGAAAAGAGCCACCCAGACTATCTTGCTGCTGG
TGATTTTCTTTGTGGTCATGTACTGGGTGGACTTCATCATCTCAACCACATCAGTTCTGTTGTGGATTTA
TGATCCAGTCAGCCTGATGGTTCAGAAGTTTCTGATGTATGCCTATCCCACAATTAGTCCTTTGGTACAA
ATCGGTTCTGATAACAGAATAATAATTATGGTGAAAAACATGTACTCAAAGCACCACCAGAGATTTTTAT
AA

Translation (303 aa):
MFSLKNVLYFQAGLGVLANMSLLCFYIFIIVGHRPKPTDLISCQLTFIHIMVCLTGGDLLLTDIFESLNI
NNDFKCKATFYISRVMRCLSICTTCLLSVFQAVTITPSTSCLAKFKQKLRKYMVYVFLCIWSFSFSYSSS
RIFYVRGFTNVSETNQMQITKSCLLFRMNSIIRVFIFTVTTSRDVFLVGMMLTTSTYMVIILYRHQRQCK
HLHSIKHLRASPEKRATQTILLLVIFFVVMYWVDFIISTTSVLLWIYDPVSLMVQKFLMYAYPTISPLVQ
IGSDNRIIIMVKNMYSKHHQRFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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