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Report for CCDS38223.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38223.1 Public Mus musculus 2 Slc28a2b 23 108 98 CCDS HistoryNCBI Gene:381417Re-query CCDS DB by CCDS ID:38223.1Re-query CCDS DB by GeneID:381417See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 38223.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110521.2 ENSMUSP00000106150.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110521.2Link to Ensembl Protein Viewer:ENSMUSP00000106150.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110521Re-query CCDS DB by Protein ID:ENSMUSP00000106150
Original member Current member NCBI NM_001085518.1 NP_001078987.1 Accepted alive Link to Nucleotide Sequence:NM_001085518.1Link to Protein Sequence:NP_001078987.1Re-query CCDS DB by Nucleotide ID:NM_001085518Re-query CCDS DB by Protein ID:NP_001078987Link to BLAST:NP_001078987.1

Chromosomal Locations for CCDS 38223.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 122486660 122486740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122486844 122486935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122493335 122493429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122494217 122494400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122514367 122514508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122516954 122517067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122517505 122517582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122517960 122518040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122518462 122518542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122521631 122521756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122521838 122521968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122522381 122522549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122522715 122522912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122523467 122523548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122524798 122524896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122525082 122525193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122527332 122527449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGGAGAAGTCAGAGGGAAGAAAGTCTGTTTCCCAGGCCAGAGTGGAGAATGGCATGGAGAACCCAGGTC
TCGAGCTCATGGAAGGTGGAAATCTTGCGCAAAGAAACACACTAGAGGAAGTGACACAGGGACTCAGCCT
GGAGGATGGCTTGGGTCATTCCTCTCTCTGGAGCAGGAGGATTTTTCAGCCTTTCACGAAGGCGAGAAGT
TTCTTTGAAAGACATGCTGGTTTATTCAGAAAGATCCTGCTTGGTCTCTTGTGTTTAGCTTATGCTGCCT
ACTTCCTGGCAGCGTGCATCCTGAACTTCCAGAGGGCACTGGCCTTGTTTGTCATCACCTGTCTTGTGTT
CTTCATTTCTGCTTACCACTTTCTGGAAAAATTCCCTGCTAAAAAATTAATAAGATGTCTAAGTTGCTTT
AGAAACTTCTGCCTGAGACGTTGTCTGAAGTGGGTGTTGCCAGGAGCCTCTGTAGTTAGCCAGATCTTGT
GGCTGGTTCTCGACACAGCTCAAAGGCCAGAGCAGCTGATCTCCTTTGCAGGAATCTGTATGTTCATCCT
CATCCTCTTTGCCTGCTCCAAACACCACAGTGCGGTATGCTGGAGGACGGTGTTTTGGGGCCTGGGCCTT
CAGTTCATCTTTGGGATTTTGGTCATCAGAACTGAACCTGGATTTAATGCATTTCAATGGCTGGGAGATC
AGATCCAGATTTTCCTGGCTTATACTGTGGAAGGATCCAGTTTTGTTTTTGGTGATACACTGGTCTACAA
TGTTTTTGCTTTTCAGTCTCTGCCAATCATTATTTTCTTCGGATGTGTGATGTCTATTCTTTACTACCTG
GGCCTTGTGCAGTGGGTGATTCAGAAGATTGCCTTGTTTCTTCAAAGCAAGATGGGCACCACTGCTCCAG
AAACCCTGGCCATGGCAGGAAACATCTTTGTGGGGCTGACAGAAGTACCTCTGCTCATCCGTCCCTACCT
TGCAGACATGACCATCTCTGAAATCCATGCAGTCATGACTGGAGGCTTTGCTACCATAGCAGGCACAATG
TTGGGAGCCTTCATATCCTTTGGGATTGATGCATCATCCTTGATTTCTGCCTCAGTGATGGCTGCCCCTT
GTGCACTTGCCCTGTCCAAACTGGTATATCCAGAAGTCAAAGAGTCCAAGTTCAAGAGCAAGGAGGGACT
GAAGCTGCCTCGAGGGGAAGAGAGGAATATCCTGGAAGCTGCAAGCAATGGAGCCACAGAAGCCATAAGC
CTTGTTGCTAATGTTGCAGCCAACCTGATTGCCTTTCTGGCTGTATTGGCCTTCGTCAATGCTACCCTCT
CCTGGCTGGGGGAAATGGTGGATTTCCGTGGACTCAGTTTCCAGGTCATCTGCTCCTATATCCTAAGGCC
CATGGCTTTCATGATGGCTGTACAGTGGACAGACTGCCTTCTGGTGATTGAGATAGTGGGAGTCAAATTC
TTCATAAATGAATTTGTGGCCTACCAGCAACTGATTCAGTACAAGAACAAACGTCTCTCTGGAGTAGAAG
AGTGGATCAATGGCGAGAAACAGTGGATTTCTGTGAAAGCTGAAATCATTACAACATTTTCCCTCTGTGG
ATTTGCCAATCTTAGTTCCATAGGAATCACACTGGGAGGCTTGACATCCATGATAACCCAGAGGAAGAGT
GACTTGTGCAAGATTGTGGTCAGGGCCCTCTTCACAGGTGCCTGTGTTTCCTTTATCAGTGCCTGCATGG
CAGGAATCCTCTATGTTCCCAGAGGCGCTGAAACTGACTGTGTCTCATTCCTAAACACAAATTTCACCAA
TAGGACCTATGAGACATATGTGTGCTGCAGAGAGCTTTTCCAGAGTACTTCGCTGAATGGCACCAACATG
CCTTCTTTCTCAGGCCCCTGGCAAGACAACGTGTCCAGCCTCAGGAATCTTGCTAGCTGCTGTGACCTCT
ATACCAGCACTGTGTGTGCATGA

Translation (660 aa):
MEKSEGRKSVSQARVENGMENPGLELMEGGNLAQRNTLEEVTQGLSLEDGLGHSSLWSRRIFQPFTKARS
FFERHAGLFRKILLGLLCLAYAAYFLAACILNFQRALALFVITCLVFFISAYHFLEKFPAKKLIRCLSCF
RNFCLRRCLKWVLPGASVVSQILWLVLDTAQRPEQLISFAGICMFILILFACSKHHSAVCWRTVFWGLGL
QFIFGILVIRTEPGFNAFQWLGDQIQIFLAYTVEGSSFVFGDTLVYNVFAFQSLPIIIFFGCVMSILYYL
GLVQWVIQKIALFLQSKMGTTAPETLAMAGNIFVGLTEVPLLIRPYLADMTISEIHAVMTGGFATIAGTM
LGAFISFGIDASSLISASVMAAPCALALSKLVYPEVKESKFKSKEGLKLPRGEERNILEAASNGATEAIS
LVANVAANLIAFLAVLAFVNATLSWLGEMVDFRGLSFQVICSYILRPMAFMMAVQWTDCLLVIEIVGVKF
FINEFVAYQQLIQYKNKRLSGVEEWINGEKQWISVKAEIITTFSLCGFANLSSIGITLGGLTSMITQRKS
DLCKIVVRALFTGACVSFISACMAGILYVPRGAETDCVSFLNTNFTNRTYETYVCCRELFQSTSLNGTNM
PSFSGPWQDNVSSLRNLASCCDLYTSTVCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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