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Report for CCDS28532.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28532.2 Public Mus musculus 17 Jmjd8 23 108 98 CCDS HistoryNCBI Gene:72106Re-query CCDS DB by CCDS ID:28532.2Re-query CCDS DB by GeneID:72106See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28532.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 28532.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000133595.8 ENSMUSP00000122744.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133595.8Link to Ensembl Protein Viewer:ENSMUSP00000122744.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000133595Re-query CCDS DB by Protein ID:ENSMUSP00000122744
Original member Current member NCBI NM_028101.5 NP_082377.3 Accepted alive Link to Nucleotide Sequence:NM_028101.5Link to Protein Sequence:NP_082377.3Re-query CCDS DB by Nucleotide ID:NM_028101Re-query CCDS DB by Protein ID:NP_082377Link to BLAST:NP_082377.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082377.3 269 Q3TA59 269 100% 0 0

Chromosomal Locations for CCDS 28532.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25829072 25829163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25829240 25829338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25829484 25829532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25829606 25829702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25829785 25829853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25829942 25830061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25830139 25830206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25830300 25830434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25830510 25830590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGGCGGCGGCTGGGCGGCGCGGTCTGCTTTTGCTCTTTGTACTATGGATGATGGTGACTGTGATTCTGC
CTGCCTCTGGCGAAGGGGGATGGAAACAGAATGGGCTGGGAATTGCAGCAGCAGTAATGGAGGAGGAGCG
TTGCACAGTGGAGCGTCGGGCACACATCACGTACTCCGAATTCATGCAGCACTATGCCTTCCTCAAGCCC
GTCATCTTGCAAGGACTCACGGACAACTCGAAGTTCCGGGCCCTGTGTTCCCGGGAAAACCTGCTAGCCT
CGTTCGGGGACAACATTGTTCGCTTGAGTACAGCCAACACCTACTCCTACCAGAAAGTGGACCTGCCCTT
CCAGGAATATGTGGAACAGCTGCTGCAGCCCCAGGATCCTGCATCCCTAGGCAATGACACCCTGTACTTT
TTTGGAGACAACAACTTCACTGAGTGGGCATCCCTCTTCCAGCACTACTCTCCGCCACCATTCCGTCTCC
TGGGAACCACCCCTGCTTACAGCTTTGGAATTGCAGGAGCTGGATCTGGGGTACCCTTCCACTGGCATGG
GCCTGGTTTCTCAGAGGTTATCTATGGTCGGAAGCGCTGGTTCCTCTACCCTCCTGAGAAGACACCTGAG
TTCCACCCTAACAAGACCACATTGGCCTGGCTGCTGGAAATATACCCATCTCTAGCCCTGTCAGCACGGC
CTCTAGAATGTACCATCCAGGCTGGTGAAGTACTGTATTTTCCTGATCGGTGGTGGCATGCCACACTCAA
TCTGGACACCAGTGTCTTCATTTCTACCTTCCTTGGCTAG

Translation (269 aa):
MAAAGRRGLLLLFVLWMMVTVILPASGEGGWKQNGLGIAAAVMEEERCTVERRAHITYSEFMQHYAFLKP
VILQGLTDNSKFRALCSRENLLASFGDNIVRLSTANTYSYQKVDLPFQEYVEQLLQPQDPASLGNDTLYF
FGDNNFTEWASLFQHYSPPPFRLLGTTPAYSFGIAGAGSGVPFHWHGPGFSEVIYGRKRWFLYPPEKTPE
FHPNKTTLAWLLEIYPSLALSARPLECTIQAGEVLYFPDRWWHATLNLDTSVFISTFLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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