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Report for CCDS11373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11373.1 Public Homo sapiens 17 KRT25 24 110 108 CCDS HistoryNCBI Gene:147183Re-query CCDS DB by CCDS ID:11373.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11373.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312150.5 ENSP00000310573.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000312150.5Link to Ensembl Protein Viewer:ENSP00000310573.4Re-query CCDS DB by Nucleotide ID:ENST00000312150Re-query CCDS DB by Protein ID:ENSP00000310573
Original member Current member NCBI NM_181534.4 NP_853512.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181534.4Link to Protein Sequence:NP_853512.1Re-query CCDS DB by Nucleotide ID:NM_181534Re-query CCDS DB by Protein ID:NP_853512Link to BLAST:NP_853512.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_853512.1 450 Q7Z3Z0 450 100% 0 0

Chromosomal Locations for CCDS 11373.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40748277 40748386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40749258 40749325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40750380 40750597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40750954 40751079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40751165 40751326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40753860 40754016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40754386 40754468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40754843 40755271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGTCTCTTCGACTTTCCAGTGCATCCAGGAGGTCCTGTCCTCGTCCCACCACTGGATCACTCAGACTCT
ATGGTGGGGGAACCAGCTTTGGTACTGGAAATTCTTGTGGCATTTCAGGGATTGGAAGTGGCTTCTCTAG
TGCCTTCGGAGGCAGCTCATCGGGAGGAAACACAGGGGGAGGTAATCCCTGTGCTGGCTTCACTGTGAAT
GAGCGGGGGCTCCTTTCTGGCAATGAGAAGGTGACCATGCAGAACCTCAATGACCGCCTGGCATCCTACC
TGGACAGTGTGCATGCTCTGGAGGAGGCCAACGCTGACCTGGAGCAGAAGATCAAGGGCTGGTATGAGAA
ATTTGGGCCTGGCTCTTGCCGTGGTCTTGATCATGACTATAGCAGATATTTCCCAATAATTGATGACCTT
AAAAATCAGATCATCGCATCCACCACCAGCAATGCTAATGCTGTTCTGCAGATCGATAATGCCAGGCTTA
CAGCTGATGATTTCAGACTCAAGTATGAAAATGAGCTGGCTCTTCACCAGAGTGTAGAGGCTGATGTCAA
TGGGTTACGAAGAGTTTTGGATGAAATAACCCTGTGCAGAACAGATCTGGAGATTCAGTATGAAACCCTG
AGTGAGGAGATGACTTACCTCAAAAAGAACCATAAAGAGGAAATGCAAGTTCTGCAGTGCGCAGCTGGAG
GCAACGTGAACGTGGAGATGAACGCAGCCCCCGGGGTGGACCTCACAGTTCTGCTGAACAACATGCGAGC
TGAGTACGAAGCCCTTGCAGAGCAGAACCGCAGGGACGCGGAGGCCTGGTTCAACGAGAAGAGCGCCTCC
CTGCAGCAGCAGATCTCTGAGGATGTCGGAGCCACAACCTCAGCCCGGAATGAGCTGACTGAAATGAAGC
GCACTCTTCAAACCCTGGAAATTGAACTTCAGTCTCTCCTAGCCACGAAACACTCCCTGGAGTGCTCCTT
GACAGAGACCGAGAGCAACTACTGTGCGCAGCTGGCGCAGATCCAGGCTCAGATCGGGGCCCTGGAGGAG
CAGCTGCACCAGGTCAGAACCGAGACCGAGGGCCAGAAGCTGGAGTATGAGCAGCTCCTGGACATCAAGC
TCCACCTGGAAAAAGAAATTGAGACCTACTGTCTCCTTATAGGAGGAGATGATGGAGCCTGTAAGTCTGG
GGGTTACAAGTCTAAAGATTATGGATCTGGAAATGTGGGAAGTCAAGTCAAAGACCCAGCCAAAGCCATA
GTGGTTAAGAAAGTTCTTGAGGAGGTAGACCAACGCAGCAAAATACTTACCACCAGGCTCCACTCCCTGG
AAGAGAAATCTCAAAGCAATTAA

Translation (450 aa):
MSLRLSSASRRSCPRPTTGSLRLYGGGTSFGTGNSCGISGIGSGFSSAFGGSSSGGNTGGGNPCAGFTVN
ERGLLSGNEKVTMQNLNDRLASYLDSVHALEEANADLEQKIKGWYEKFGPGSCRGLDHDYSRYFPIIDDL
KNQIIASTTSNANAVLQIDNARLTADDFRLKYENELALHQSVEADVNGLRRVLDEITLCRTDLEIQYETL
SEEMTYLKKNHKEEMQVLQCAAGGNVNVEMNAAPGVDLTVLLNNMRAEYEALAEQNRRDAEAWFNEKSAS
LQQQISEDVGATTSARNELTEMKRTLQTLEIELQSLLATKHSLECSLTETESNYCAQLAQIQAQIGALEE
QLHQVRTETEGQKLEYEQLLDIKLHLEKEIETYCLLIGGDDGACKSGGYKSKDYGSGNVGSQVKDPAKAI
VVKKVLEEVDQRSKILTTRLHSLEEKSQSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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