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Report for CCDS17808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17808.1 Public Mus musculus 3 Gclm 23 108 98 CCDS HistoryNCBI Gene:14630Re-query CCDS DB by CCDS ID:17808.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17808.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029769.13 ENSMUSP00000029769.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029769.13Link to Ensembl Protein Viewer:ENSMUSP00000029769.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029769Re-query CCDS DB by Protein ID:ENSMUSP00000029769
Original member Current member EBI ENSMUST00000178826.7 ENSMUSP00000136987.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178826.7Link to Ensembl Protein Viewer:ENSMUSP00000136987.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178826Re-query CCDS DB by Protein ID:ENSMUSP00000136987
Original member Current member NCBI NM_008129.4 NP_032155.1 Accepted alive Link to Nucleotide Sequence:NM_008129.4Link to Protein Sequence:NP_032155.1Re-query CCDS DB by Nucleotide ID:NM_008129Re-query CCDS DB by Protein ID:NP_032155Link to BLAST:NP_032155.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032155.1 274 O09172 274 100% 0 0

Chromosomal Locations for CCDS 17808.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 122245986 122246111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122255545 122255610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122259207 122259291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122261868 122261927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122262600 122262802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122264794 122264908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122266228 122266397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGGCACCGACAGCCGCGCGGCCGGGGCGCTCCTGGCGCGGGCCAGCACCCTGCACCTGCAGACCGGGA
ACCTGCTCAACTGGGGCCGCCTGCGAAAAAAGTGCCCGTCCACGCACAGCGAGGAGCTTCGGGACTGTAT
CCAAAAGACCTTGAATGAATGGAGTTCCCAAATCAGCCCCGATTTAGTCAGGGAGTTTCCAGATGTTTTG
GAATGCACCATGTCCCATGCAGTGGAGAAGATAAATCCCGATGAAAGAGAAGAAATGAAAGTTTCTGCAA
AACTGTTCATTGTAGGATCGAATTCTTCATCATCAACTAGAAGTGCAGTTGACATGGCATGCTCCGTCCT
TGGAGTTGCACAGCTGGACTCTGTGATCATGGCTTCGCCTCCGATTGAAGATGGAGTTAATCTTTCCTTG
GAGCATTTACAGCCTTACTGGGAGGAATTAGAGAACTTAGTTCAGAGCAAGAAAATTGTTGCTATAGGCA
CCTCTGATCTAGACAAGACACAGTTGGAGCAGCTGTATCAGTGGGCACAGGTAAAACCCAATAGTAACCA
AGTTAACCTGGCCTCCTGCTGTGTGATGCCACCAGATTTGACTGCCTTTGCTAAACAATTTGACATACAG
CTACTGACTCACAATGACCCGAAAGAACTGCTCTCTGAGGCAAGTTTCCAGGAAGCTCTTCAAGAAAGCA
TCCCTGACATTGAAGCCCAGGATTGGGTGCCGCTGTGGCTGCTGAGGTACTCGGTCATCGTGAAGAGCAG
GGGAATCATCAAGTCTAAAGGCTACATTCTGCAAGCCAAAAGGAGGGGCTCTTAA

Translation (274 aa):
MGTDSRAAGALLARASTLHLQTGNLLNWGRLRKKCPSTHSEELRDCIQKTLNEWSSQISPDLVREFPDVL
ECTMSHAVEKINPDEREEMKVSAKLFIVGSNSSSSTRSAVDMACSVLGVAQLDSVIMASPPIEDGVNLSL
EHLQPYWEELENLVQSKKIVAIGTSDLDKTQLEQLYQWAQVKPNSNQVNLASCCVMPPDLTAFAKQFDIQ
LLTHNDPKELLSEASFQEALQESIPDIEAQDWVPLWLLRYSVIVKSRGIIKSKGYILQAKRRGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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