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Report for CCDS50623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50623.1 Public Mus musculus 2 Ctnnd1 23 108 98 CCDS HistoryNCBI Gene:12388Re-query CCDS DB by CCDS ID:50623.1Re-query CCDS DB by GeneID:12388See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50623.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036811.12 ENSMUSP00000042543.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036811.12Link to Ensembl Protein Viewer:ENSMUSP00000042543.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036811Re-query CCDS DB by Protein ID:ENSMUSP00000042543
Original member Current member EBI ENSMUST00000111697.8 ENSMUSP00000107326.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111697.8Link to Ensembl Protein Viewer:ENSMUSP00000107326.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111697Re-query CCDS DB by Protein ID:ENSMUSP00000107326
Original member Current member NCBI NM_001085448.1 NP_001078917.1 Accepted alive Link to Nucleotide Sequence:NM_001085448.1Link to Protein Sequence:NP_001078917.1Re-query CCDS DB by Nucleotide ID:NM_001085448Re-query CCDS DB by Protein ID:NP_001078917Link to BLAST:NP_001078917.1
Original member Current member NCBI NM_001355065.1 NP_001341994.1 Accepted alive Link to Nucleotide Sequence:NM_001355065.1Link to Protein Sequence:NP_001341994.1Re-query CCDS DB by Nucleotide ID:NM_001355065Re-query CCDS DB by Protein ID:NP_001341994Link to BLAST:NP_001341994.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078917.1 917 P30999-3 917 100% 0 0
NP_001341994.1 917 P30999-3 917 100% 0 0

Chromosomal Locations for CCDS 50623.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84602892 84602903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84603649 84603752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84608329 84608416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84608960 84609074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84609530 84609722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84610508 84610658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84610763 84610890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84612024 84612092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84612532 84612549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84612936 84613089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84613888 84614005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84615088 84615271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84616480 84616943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84619919 84620454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84620835 84620987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84622011 84622082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84624270 84624464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2754 nt):
ATGGACGACTCAGAGGTGGAGTCGACCGCCAGCATCTTGGCCTCTGTGAAAGAACAAGAGGCCCAGTTTG
AGAAGCTGACCCGGGCGCTGGAAGAGGAGCGGCGCCATGTCTCGGCGCAACTGGAACGCGTCCGGGTCTC
ACCACAAGATGCCAACTCACTCATGGCCAATGGCACCCTCACTCGTCGGCATCAGAACGGCCGGTTTGTG
GGCGATGCTGACCTTGAGAGACAGAAATTTTCAGATCTGAAACTCAACGGACCCCAGGATCACAACCACC
TTCTGTACAGCACTATCCCCAGGATGCAGGAGCCAGGACAGATTGTGGAAACCTACACCGAGGAGGACCC
TGAAGGAGCCATGTCTGTTGTTTCTGTGGAGACCACAGATGATGGGACCACTAGACGCACGGAGACCACA
GTCAAAAAAGTTGTGAAGACAATGACAACTCGGACAGTACAGCCTGTCCCCATGGGGCCAGACGGGCTGC
CCGTGGACGCCTCAGCAGTCTCCAATAACTATATCCAGACCTTGGGCCGTGATTTTCGCAAGAATGGCAA
TGGGGGCCCTGGTCCCTATGTGGGGCAAGCGGGCACTGCCACTCTTCCTAGGAACTTCCACTATCCTCCA
GATGGGTATGGCCGACACTATGAAGATGGTTATCCAGGTGGCAGTGACAACTACGGCAGTCTGTCCCGGG
TGACCCGAATTGAGGAGCGGTATAGGCCCAGCATGGAAGGCTACCGGGCACCCAGTAGACAAGATGTCTA
TGGGCCCCAGCCCCAGGTTCGAGTAGGTGGAAGCAGTGTGGACCTGCATCGTTTTCATCCTGAGCCTTAC
GGGCTAGAGGATGACCAGCGCAGCATGGGCTATGATGACCTCGATTACGGCATGATGTCTGATTATGGTA
CTGCCCGTCGGACAGGAACACCCTCTGACCCTCGACGACGCCTCAGGAGCTATGAAGACATGATTGGTGA
AGAGGTGCCGCCTGATCAGTACTATTGGGCTCCTTTAGCTCAGCATGAGCGGGGCAGTTTAGCAAGCTTG
GATAGTTTGCGAAAGGGAATGCCCCCACCTTCAAACTGGAGACAGCCTGAGCTGCCAGAGGTGATTGCCA
TGTTAGGCTTCCGCTTGGATGCTGTTAAGTCCAATGCAGCTGCATACCTGCAGCACTTATGCTACCGCAA
TGACAAGGTGAAGACTGACGTGCGGAAGCTCAAGGGTATCCCGATATTGGTAGGATTGTTAGACCATCCC
AAAAAGGAAGTGCACCTCGGAGCCTGTGGAGCTCTCAAGAATATCTCTTTTGGACGTGACCAAGATAACA
AGATCGCCATAAAAAACTGTGATGGTGTTCCTGCTCTGGTCCGATTGCTCCGAAAGGCTCGTGATATGGA
CCTGACTGAAGTGATTACTGGAACCCTGTGGAATCTCTCATCCCATGATTCAATCAAAATGGAGATTGTG
GACCATGCGCTACATGCCTTGACAGATGAAGTTATCATTCCACATTCTGGTTGGGAGAGAGAACCTAATG
AAGACTGTAAGCCACGGCATATTGAATGGGAGTCAGTGCTTACCAACACTGCTGGCTGCCTTCGGAACGT
AAGCTCAGAGAGGAGTGAAGCCCGGAGGAAACTTCGGGAATGTGACGGCTTAGTTGATGCCCTCATTTTC
ATCGTTCAGGCAGAAATTGGGCAGAAGGATTCAGACAGTAAGCTTGTGGAGAATTGTGTTTGCCTCCTCC
GGAACTTATCATACCAAGTTCATCGTGAAATCCCACAGGCAGAGCGTTACCAGGAGGCCCTTCCTACTGT
GGCTAACAGTACTGGGCCACACGCTGCCAGTTGCTTTGGAGCCAAGAAGGGCAAAGATGAGTGGTTCTCC
AGAGGGAAAAAGCCTACAGAGGATCCAGCAAATGATACAGTGGATTTCCCTAAAAGAACTAGTCCTGCTC
GAGGCTATGAACTCTTATTTCAGCCAGAAGTGGTGCGAATATACATTTCACTCCTTAAGGAGAGCAAGAC
GCCTGCCATCTTAGAAGCCTCGGCCGGAGCTATCCAGAACTTGTGTGCTGGGCGTTGGACATATGGCAGA
TACATCCGCTCTGCTCTTCGTCAGGAGAAGGCTCTCTCTGCCATAGCTGAGCTCCTTACGAGTGAGCATG
AGCGAGTAGTAAAAGCTGCTTCTGGGGCACTGAGAAATCTGGCTGTGGATGCTCGGAACAAAGAGTTAAT
TGGCAAGCATGCTATTCCTAACTTGGTAAAGAATCTGCCAGGAGGTCAACAGAACTCCTCCTGGAATTTT
TCTGAAGATACTGTGGTCTCCATATTGAACACCATCAACGAAGTTATCGCTGAGAACTTAGAAGCTGCCA
AAAAGCTTCGAGAGACGCAGGGTATTGAGAAGCTGGTGTTGATCAACAAATCAGGGAATCGTTCAGAAAA
AGAAGTCCGGGCAGCAGCTCTTGTCCTGCAGACAATCTGGGGCTATAAGGAGCTTCGGAAGCCACTGGAA
AAAGAAGGATGGAAGAAATCAGACTTCCAGGTGAATCTAAACAATGCATCTAGAAGCCAGAGCAGCCATT
CATATGATGATAGCACTCTCCCCCTCATTGACCGGAATCAAAAATCAGATAACAACTATTCCACACTGAA
TGAGAGAGGAGACCACAACAGAACACTGGACCGATCTGGGGATCTGGGTGATATGGAACCATTGAAGGGA
GCACCCTTGATGCAGAAGATTTAG

Translation (917 aa):
MDDSEVESTASILASVKEQEAQFEKLTRALEEERRHVSAQLERVRVSPQDANSLMANGTLTRRHQNGRFV
GDADLERQKFSDLKLNGPQDHNHLLYSTIPRMQEPGQIVETYTEEDPEGAMSVVSVETTDDGTTRRTETT
VKKVVKTMTTRTVQPVPMGPDGLPVDASAVSNNYIQTLGRDFRKNGNGGPGPYVGQAGTATLPRNFHYPP
DGYGRHYEDGYPGGSDNYGSLSRVTRIEERYRPSMEGYRAPSRQDVYGPQPQVRVGGSSVDLHRFHPEPY
GLEDDQRSMGYDDLDYGMMSDYGTARRTGTPSDPRRRLRSYEDMIGEEVPPDQYYWAPLAQHERGSLASL
DSLRKGMPPPSNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPILVGLLDHP
KKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV
DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIF
IVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEALPTVANSTGPHAASCFGAKKGKDEWFS
RGKKPTEDPANDTVDFPKRTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGR
YIRSALRQEKALSAIAELLTSEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNF
SEDTVVSILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLE
KEGWKKSDFQVNLNNASRSQSSHSYDDSTLPLIDRNQKSDNNYSTLNERGDHNRTLDRSGDLGDMEPLKG
APLMQKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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