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Report for CCDS42179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42179.1 Public Homo sapiens 16 KCTD19 24 110 108 CCDS HistoryNCBI Gene:146212Re-query CCDS DB by CCDS ID:42179.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42179.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304372.6 ENSP00000305702.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304372.6Link to Ensembl Protein Viewer:ENSP00000305702.5Re-query CCDS DB by Nucleotide ID:ENST00000304372Re-query CCDS DB by Protein ID:ENSP00000305702
Original member Current member NCBI NM_001100915.3 NP_001094385.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001100915.3Link to Protein Sequence:NP_001094385.1Re-query CCDS DB by Nucleotide ID:NM_001100915Re-query CCDS DB by Protein ID:NP_001094385Link to BLAST:NP_001094385.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094385.1 926 Q17RG1 926 100% 0 0

Chromosomal Locations for CCDS 42179.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 67289569 67289682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67290885 67290986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67291309 67291463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67291646 67291837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67293544 67294171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67294580 67294694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67294973 67295056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67295263 67295405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67296159 67296259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67297503 67297663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67299363 67299573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67301791 67301922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67303146 67303337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67304421 67304571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67320589 67320885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67326705 67326707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGGAGGAGTCTGGCATGGCTCATGAATCAGCAGAGGACTTGTTTCATTTCAACGTAGGGGGCTGGCATT
TCTCAGTTCCCAGAAGCAAACTCTCTCAGTTTCCAGACTCCCTGCTGTGGAAAGAGGCTTCAGCCTTGAC
CTCTTCAGAAAGCCAGAGGCTATTTATCGACAGAGATGGTTCCACATTTAGGCACGTGCACTATTACCTC
TACACCTCCAAACTCTCCTTCTCCAGTTGTGCAGAACTGAACTTGCTGTATGAGCAAGCATTGGGTTTGC
AGCTGATGCCTTTGCTGCAGACTCTAGATAACCTGAAGGAAGGGAAACACCATCTACGCGTACGGCCTGC
AGACCTACCTGTTGCTGAGAGAGCATCTCTGAACTACTGGCGTACATGGAAGTGTATTAGCAAACCCTCA
GAATTTCCAATTAAAAGCCCAGCCTTTACAGGCCTACATGATAAGGCACCTCTGGGGCTCATGGACACAC
CCCTGTTAGACACAGAAGAGGAGGTGCACTACTGCTTCCTGCCCCTAGACCTGGTGGCCAAATATCCCAG
CCTAGTGACTGAAGACAACCTGCTGTGGCTGGCTGAGACGGTGGCCCTCATCGAGTGCGAGTGCAGCGAG
TTCCGCTTCATTGTGAATTTTCTTCGCTCACAGAAGATTTTACTACCGGATAATTTCTCCAACATTGATG
TATTAGAAGCAGAAGTGGAAATTCTGGAAATCCCTGCACTCACTGAAGCCGTAAGGTGGTACCGGATGAA
CATGGGTGGCTGTTCCCCGACCACCTGTTCTCCCCTGAGCCCCGGGAAGGGGGCCCGCACAGCCAGCCTG
GAGTCCGTGAAACCGCTCTACACAATGGCCCTGGGTCTGCTGGTCAAGTACCCGGACTCTGCGCTGGGCC
AGCTTCGCATCGAGAGCACGCTAGACGGAAGCCGACTGTACATCACAGGGAATGGCGTCCTCTTTCAGCA
CGTCAAGAACTGGCTGGGGACTTGCCGGCTGCCCCTGACAGAGACCATTTCCGAGGTATATGAGCTCTGT
GCCTTCCTAGACAAAAGGGACATCACCTACGAGCCAATCAAAGTTGCTTTGAAGACTCATCTGGAGCCAA
GGACTTTGGCACCCATGGATGTGCTCAATGAGTGGACGGCAGAGATCACTGTGTATTCCCCACAACAGAT
CATCAAAGTGTATGTTGGAAGCCACTGGTACGCAACCACCCTGCAGACACTGCTGAAGTATCCAGAACTG
CTGTCCAACCCTCAGAGAGTGTACTGGATCACATATGGACAAACCCTGCTCATCCACGGGGATGGCCAGA
TGTTCCGACACATTCTCAACTTCCTGAGACTTGGCAAACTGTTTTTACCATCTGAATTTAAGGAATGGCC
CCTCTTCTGCCAGGAGGTGGAGGAATACCACATTCCATCCCTCTCAGAAGCCCTTGCACAATGTGAAGCA
TACAAGTCATGGACTCAGGAGAAAGAATCTGAAAATGAAGAAGCTTTTTCCATCAGGAGGCTGCATGTGG
TGACAGAAGGGCCAGGGTCACTGGTGGAGTTCAGTAGAGACACTAAAGAAACCACAGCCTACATGCCTGT
GGACTTCGAAGACTGCAGTGACAGGACTCCATGGAACAAGGCTAAGGGAAACCTGGTCAGGTCCAACCAG
ATGGATGAGGCTGAGCAGTACACTCGGCCCATCCAGGTGTCCCTATGCCGAAATGCCAAGAGGGCTGGCA
ACCCTAGCACATACTCACACTGCCGTGGCTTGTGTACCAATCCTGGACACTGGGGGAGCCACCCTGAGAG
CCCCCCAAAGAAGAAATGCACCACAATCAACCTCACACAGAAATCTGAAACCAAAGACCCTCCCGCCACT
CCCATGCAAAAACTCATCTCCCTGGTGAGAGAATGGGACATGGTCAATTGCAAACAGTGGGAATTCCAGC
CACTGACAGCCACACGGAGCAGCCCCTTGGAGGAGGCCACCCTGCAGCTCCCCTTGGGAAGCGAGGCTGC
TTCCCAGCCCAGCACCTCAGCTGCCTGGAAAGCCCATTCCACAGCCTCAGAGAAGGATCCAGGACCACAG
GCAGGGGCTGGAGCTGGAGCGAAAGACAAGGGGCCAGAGCCAACCTTCAAGCCATACTTACCCCCAAAAA
GAGCTGGCACCCTGAAGGACTGGAGCAAGCAGAGGACCAAGGAGAGAGAAAGCCCTGCCCCTGAGCAGCC
TCTGCCCGAGGCCAGTGAGGTGGACAGCCTAGGGGTTATCCTCAAAGTGACTCACCCCCCCGTGGTGGGC
AGCGATGGCTTCTGCATGTTCTTTGAGGACAGCATCATCTATACCACGGAGATGGACAACCTCAGGCACA
CAACACCCACAGCCAGTCCCCAGCCCCAAGAAGTGACTTTCCTGAGTTTCTCTCTGTCCTGGGAAGAGAT
GTTTTATGCACAGAAATGTCACTGCTTCCTGGCTGACATCATCATGGATTCCATCAGGCAAAAGGACCCC
AAAGCCATCACAGCCAAGGTGGTCTCCCTGGCCAATCGGCTGTGGACCCTGCACATCAGCCCCAAGCAGT
TTGTGGTAGATTTGCTGGCCATCACCGGCTTCAAGGATGACCGGCACACCCAGGAGCGCCTGTACAGCTG
GGTGGAGCTTACACTGCCCTTCGCCAGGAAATATGGCCGATGCATGGACCTGCTCATCCAGAGGGGCCTG
TCTAGGTCTGTCTCTTACTCCATCCTGGGAAAGTACCTACAAGAGGACTAG

Translation (926 aa):
MEESGMAHESAEDLFHFNVGGWHFSVPRSKLSQFPDSLLWKEASALTSSESQRLFIDRDGSTFRHVHYYL
YTSKLSFSSCAELNLLYEQALGLQLMPLLQTLDNLKEGKHHLRVRPADLPVAERASLNYWRTWKCISKPS
EFPIKSPAFTGLHDKAPLGLMDTPLLDTEEEVHYCFLPLDLVAKYPSLVTEDNLLWLAETVALIECECSE
FRFIVNFLRSQKILLPDNFSNIDVLEAEVEILEIPALTEAVRWYRMNMGGCSPTTCSPLSPGKGARTASL
ESVKPLYTMALGLLVKYPDSALGQLRIESTLDGSRLYITGNGVLFQHVKNWLGTCRLPLTETISEVYELC
AFLDKRDITYEPIKVALKTHLEPRTLAPMDVLNEWTAEITVYSPQQIIKVYVGSHWYATTLQTLLKYPEL
LSNPQRVYWITYGQTLLIHGDGQMFRHILNFLRLGKLFLPSEFKEWPLFCQEVEEYHIPSLSEALAQCEA
YKSWTQEKESENEEAFSIRRLHVVTEGPGSLVEFSRDTKETTAYMPVDFEDCSDRTPWNKAKGNLVRSNQ
MDEAEQYTRPIQVSLCRNAKRAGNPSTYSHCRGLCTNPGHWGSHPESPPKKKCTTINLTQKSETKDPPAT
PMQKLISLVREWDMVNCKQWEFQPLTATRSSPLEEATLQLPLGSEAASQPSTSAAWKAHSTASEKDPGPQ
AGAGAGAKDKGPEPTFKPYLPPKRAGTLKDWSKQRTKERESPAPEQPLPEASEVDSLGVILKVTHPPVVG
SDGFCMFFEDSIIYTTEMDNLRHTTPTASPQPQEVTFLSFSLSWEEMFYAQKCHCFLADIIMDSIRQKDP
KAITAKVVSLANRLWTLHISPKQFVVDLLAITGFKDDRHTQERLYSWVELTLPFARKYGRCMDLLIQRGL
SRSVSYSILGKYLQED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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