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Report for CCDS29829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29829.1 Public Mus musculus 19 R3hcc1l 23 108 98 CCDS HistoryNCBI Gene:52013Re-query CCDS DB by CCDS ID:29829.1Re-query CCDS DB by GeneID:52013See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29829.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026188.9 ENSMUSP00000026188.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026188.9Link to Ensembl Protein Viewer:ENSMUSP00000026188.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000026188Re-query CCDS DB by Protein ID:ENSMUSP00000026188
Original member Current member NCBI NM_177464.4 NP_803415.1 Accepted alive Link to Nucleotide Sequence:NM_177464.4Link to Protein Sequence:NP_803415.1Re-query CCDS DB by Nucleotide ID:NM_177464Re-query CCDS DB by Protein ID:NP_803415Link to BLAST:NP_803415.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803415.1 775 Q8BJM3 775 100% 0 0

Chromosomal Locations for CCDS 29829.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42562566 42564341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42576026 42576201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42581920 42581990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42582825 42582920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42583403 42583543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42590605 42590672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2328 nt):
ATGCAGCAAGAAGCAGAGAGATGTAGAGTTCGAACCAAAAGGCCTGACATGGCACTCTATGTACCTAAAG
CTCGAAGGGGAACAGCTCTCCTCAAGTCAAGTGACCAGGAGGAAGGCCATGGGCCTCCTGCCTTTGTGCC
AAAAGATCAAAAAGAAGGTTGTCTTCCCCAGAAGATCTCTGCAAGTAAACCCGAGTCCCAGAGACGAGGT
GCAGGCCATTCTGATAGGAAGGATGTTGACTGTAGGGAAGGAAAGAGATCTGCATCACAACTAAGGAAAG
ACAGGTGCCCACAAAAACAGAATAAAGAGAAGGCTTGTTCTAAGAAAGGAGCTGAAGAATCCACAGAAGC
CTCATCCCAAGAACATCAACACAGAGCTCCCGACGCTGGGATTGTATCTAGTATACCTTTACAAAGACTT
TTTAAACCAAAGGACATGGACTGTTGGGAAGTTCAGACTGCGGGAGCGACAGGACACTGGCGGGTGTCTC
CATCTCAGTCTTCCTCAGAAGTCAGTGCTGCTCAGGTTCCAAGCAGACCATTCCAGAATGTGGAACTCTG
TGATTTCAGTGGGGAAACTTTTGTAAATAGAAATTTGGAAAGCAGCATTGTAACTGAGGCCAAAGTTCCA
GAGCTAGTCTCCCAATTTCCTCAAGTTGTTACCACTCTGCTGAAACCAGATGGTATGGCTATGCCAGTAA
CACTAAGTTCTGATTCTGAAACTGCACCATCCAGTCTGGAAACACCAGATGGGATGTCAAAGCACAGTCC
TGGGGACATCTCTGTGGTTTCTGTTCCTGGAGGTCCAGATGAAGATGTTGATTCAACTTTTGTAGACTTT
GAAGTTGAGAGTGAGGGTACAGTCAACAGTACAGAGTCTGTCTTGGGTCAAAAAGGTGTAGATTCCATTC
TTGAGACTGTGGATAACGTTTCTCTTAAAATGGCGGTAGTCAGCAAATTAGAGAGCACAAATGGCACTAT
TGATCCAGCAGTGACTAGAGAATGTGAGAGTGACAGCTCTGCTGATGAGTTATGTGTAAAGTCTGAACCT
TCTGATACAGCGGTCCTCGTGCATGAAATAGACACAGATGATGGATTTAGGAATGTATGTGACAGTACCA
GCAAGGCTTGTATGGTGGACATTGCAGGTACAGCTTGTGACCCTGTAACTGAAGGCAGCTCTTGTACAGG
TGCAGTTGGAGAATCTGGTGAGAGTAGTGGCAACATGAGAAATTTCTCAGATTATATAGAAATGAGTGCA
GATGTAGCTCCACTTGATAGAGCTAAGAGTGAGAACGACTCTGAAAACATTAGCAGCCTAAGTGCTTGCT
CAGATATTTATGCTGAGAGTATTGCATCTGGTTTTACAGAGTCAACAGGAAAGTTGATAGAAAGTGTGTC
AGATGGTGCTTCCTCTTTACCCATAAAGAAGACTGCTGATAGTAATATTGCCACTTGTCTGGACTCTGAA
CTGAGTATGTCAGATGCATCAGACGTACTTTTGGAGAGTGCCTTGGGCAGTGATCTGGATACCACTGAGG
AGATGACAGAGGCCTTGCACGACCTAAAAACTGCTGAAGAGTTTAAAACAAAAGAGGAAGATTACTCAGA
GAGTGTAGTGTGTGGCATATCATTTTCTGATTCATCTGTGGAAACATCTGTAGATCTAAAAACAACAGAC
ACTTCTCACATACAAGGAAGTAGTGCTGTGGAGGAAAGCTGGGAATCTATGTTTAATGATGATGGTGATT
GTGTAGATCCACGTCTTCTACTAGAGTTATCTGGGAATGTGAAGAACAGAAAAAGCATCCAGGAGCCTAG
ATTTGATTATTACAGCCATGAACTTCCTGATATTGACCTCAGTGAATGTGAATTCCCACATGTCATTGAA
ATTTATGATTTTCCTCAAGAATTTCGTACAGAAGACCTTTTGCGGATTTTCTGCAGTTACCAAAAGAAAG
GATTTGATATTAAGTGGGTAGATGACACACATGCCTTAGGAGTTTTCGCCAGCCCAATCACAGCTCGCGA
TGCCCTGGGTACTAAACATACCATGGTGAAGATCCGGCCCTTGTCACAGGCCACAAGAGCAGCCAAGGCC
AAAGCTAGAGCGTGTGCTGAGTTTCTCCAGCCAGCAAAGGAACGACCTGAGACTTCAGCAGCCTTAGCCA
GAAGGCTAGTCATCAGTGCCCTTGGGGTTCGAAGCAAACAGAGCAAAACTGAACGGGAAGCAGAGCTCAG
GAAACTGCAGGAAGCCCGAGAGAGAAAACGGTTGGAAGCCAAGCAACGGGAAGACATCTGGGAAGGCAGA
GACCAGTCTGTGGTTTGA

Translation (775 aa):
MQQEAERCRVRTKRPDMALYVPKARRGTALLKSSDQEEGHGPPAFVPKDQKEGCLPQKISASKPESQRRG
AGHSDRKDVDCREGKRSASQLRKDRCPQKQNKEKACSKKGAEESTEASSQEHQHRAPDAGIVSSIPLQRL
FKPKDMDCWEVQTAGATGHWRVSPSQSSSEVSAAQVPSRPFQNVELCDFSGETFVNRNLESSIVTEAKVP
ELVSQFPQVVTTLLKPDGMAMPVTLSSDSETAPSSLETPDGMSKHSPGDISVVSVPGGPDEDVDSTFVDF
EVESEGTVNSTESVLGQKGVDSILETVDNVSLKMAVVSKLESTNGTIDPAVTRECESDSSADELCVKSEP
SDTAVLVHEIDTDDGFRNVCDSTSKACMVDIAGTACDPVTEGSSCTGAVGESGESSGNMRNFSDYIEMSA
DVAPLDRAKSENDSENISSLSACSDIYAESIASGFTESTGKLIESVSDGASSLPIKKTADSNIATCLDSE
LSMSDASDVLLESALGSDLDTTEEMTEALHDLKTAEEFKTKEEDYSESVVCGISFSDSSVETSVDLKTTD
TSHIQGSSAVEESWESMFNDDGDCVDPRLLLELSGNVKNRKSIQEPRFDYYSHELPDIDLSECEFPHVIE
IYDFPQEFRTEDLLRIFCSYQKKGFDIKWVDDTHALGVFASPITARDALGTKHTMVKIRPLSQATRAAKA
KARACAEFLQPAKERPETSAALARRLVISALGVRSKQSKTEREAELRKLQEARERKRLEAKQREDIWEGR
DQSVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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