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Report for CCDS27676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27676.1 Public Mus musculus 15 Polr3h 23 108 98 CCDS HistoryNCBI Gene:78929Re-query CCDS DB by CCDS ID:27676.1Re-query CCDS DB by GeneID:78929See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27676.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023113.6 ENSMUSP00000023113.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023113.6Link to Ensembl Protein Viewer:ENSMUSP00000023113.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023113Re-query CCDS DB by Protein ID:ENSMUSP00000023113
Original member Current member NCBI NM_030229.4 NP_084505.2 Accepted alive Link to Nucleotide Sequence:NM_030229.4Link to Protein Sequence:NP_084505.2Re-query CCDS DB by Nucleotide ID:NM_030229Re-query CCDS DB by Protein ID:NP_084505Link to BLAST:NP_084505.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084505.2 204 Q9D2C6 204 100% 0 0

Chromosomal Locations for CCDS 27676.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81916612 81916665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81917200 81917401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81918268 81918331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81918675 81918761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81922409 81922505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81925786 81925896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGTTCGTGCTGGTGGAGATGGTGGACACCGTGCGCATACCCCCGTGGCAGTTTGAGCGGAAACTCAACG
ATTCCATTGCTGAGGAGCTGAACAAGAAATTGGCCAACAAGGTCGTATACAACGTGGGACTCTGCATCTG
TCTGTTTGATATCACCAAGCTGGAGGACGCCTATGTGTTCCCAGGGGATGGAGCATCCCACACCAAAGTC
CATTTCCGCTACGTGGTGTTTCACCCCTTCCTGGATGAGATCCTCATTGGGAAGATCAAAGGCTGCAGCC
CAGAGGGTGTGCACGTCTCTTTAGGGTTCTTTGATGACATTCTCATCCCCCCTGAGTCACTGCAGCAGCC
TGCCAAGTTTGATGAAGCGGAGCAAGTGTGGGTGTGGGAGTACGAGACGGAGGAAGGAGCGCATGACCTG
TACATGGACACTGGGGAGGAGATCCGCTTCAGGGTGGTGGATGAGAGCTTTGTGGACACATCCCCCACAG
GACCCAGTTCCGCCGAGGCTGCCTCTTCAAGCGAGGAGCTGCCCAAGAAGGAAGCACCATATACACTTGT
GGGATCTATCAGTGAGCCAGGACTAGGCCTTCTCTCCTGGTGGACGAGCAACTAG

Translation (204 aa):
MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKV
HFRYVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDL
YMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPKKEAPYTLVGSISEPGLGLLSWWTSN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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