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Report for CCDS20093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20093.1 Public Mus musculus 6 Nobox 23 108 98 CCDS HistoryNCBI Gene:18291Re-query CCDS DB by CCDS ID:20093.1Re-query CCDS DB by GeneID:18291See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20093.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031749.15 ENSMUSP00000031749.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031749.15Link to Ensembl Protein Viewer:ENSMUSP00000031749.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031749Re-query CCDS DB by Protein ID:ENSMUSP00000031749
Original member Current member NCBI NM_130869.3 NP_570939.1 Accepted alive Link to Nucleotide Sequence:NM_130869.3Link to Protein Sequence:NP_570939.1Re-query CCDS DB by Nucleotide ID:NM_130869Re-query CCDS DB by Protein ID:NP_570939Link to BLAST:NP_570939.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570939.1 527 Q8VIH1 527 100% 0 0

Chromosomal Locations for CCDS 20093.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43303955 43304265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43304865 43305169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43305504 43305735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43305964 43306049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43306303 43306409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43306715 43306821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43307175 43307282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43307383 43307673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43309490 43309526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGGAACCTACGGAGAAGCTCTGCAAGAAAATGCAGGGCCAGGAAGCTGGTGACAAGCCCAGGACTGCTG
CACTGGAGACAGAGGGACCACTGCAGGATTCTGCCCTGCCCATCCAGGATGATCAAGACAAGCAGTCCTC
ACTCCCCAGGGCTAGCTTGGGGAAGAGGCCACTGTCGAAGACCTCTGAGGAGTTAATGGATGCTGGCACG
TGCAGAGTGCACAAAGCCCCCACAGCAGCCGCATGTGGTCCCCAATCCGAGGAAGAAGGTTGTTCTCCCC
CAGAGAGAAAGGCAGAATCGCTGAAGCCATCCATTTCTGCAGTCCCTGGCCAAGCCACCGCCGGTTCCCT
CAACTCTCATGAAGGGGACCTGAAGAAAGAATCCCTAGAAGTGACCTGTCAATTTCGGAAAAAGACCCGA
ACCCTGTACCGCTCAGACCAGCTGGAAGAACTGGAGAGGATATTTCAGGAAGACCACTATCCTGACAGTG
ACAAACGCCATGAGATTTCCCAGATGGTGGGGGTAACCCCCCAAAGAATCATGGTGTGGTTTCAGAACCG
CAGGGCAAAGTGGAGAAAAGTGGAGAAACTGAACGAGAAGGAAACTAAGAATGGTCCTGCAGCCCCCAGT
GCTGACAGCAGCCAGCACAGATCTGCTCCTGAGCTCCTAGACCCTATGCCTACAGACCTAGAACCTGGCC
CTGTTCCTCCAGAGAACATCCTGGATGTCTTTCCTGAGCCCCCCATGCTGCTGACTTCTGAACAGACTCT
GACCCCCTTTCAGAATAATGAGGGTGCTGAGAGGGTGGCAGTGACTCCACCACTCCTCAGTCCCCCACCT
ATTCGAAGGGCCAACCTTCCTCTTCCTCTGGGTCCTGTTCAAACTCCTCAAGTACTGCCTCCAATGAGGG
ACGTTCCTGGCAGTGACAGCATATACAAGGACAAGGCCTATGTGTCCTGGGGCACTAGTATCGCCTCACC
ACCCACCTACTCAAATTTGGAAGACCTGGGGTCTCAGGACTACCAAGCAAGCAGCCAGTTGGGTTCATTC
CAGCTCTCCCAGGCTCCACATTTACCCCTTTTCCCATCCCTTCAGTCACAGTTTCCGTATCTGCCCCCCT
TCCCTTACCCCATCCCAAGCTCAATGCCATTTCTACCACCAGAAGACTCTCTGTTTTCATTTCCTTTTGG
CTTCAGTGGAGACTCATCACAGGATTATTGCCCAGGACCCCCACCAGGTCAGATCTTGCTGCAGCCACCT
GCTGAAAACATGGGTACAGGACCCTGGAGTGGCCATTGCTTGCCAGAACCTCCCTTCCCTCGTCCACACT
ACCCACAGGCTCTGGGACAACCCCTAGGGGCAGAGGGTTACTTTCCTAACCTATTGCCAACTCCATATGC
TCTGACTATGAGTAAGCAGTCTTCATTAGGCCTCAATGGGCTTCTCGAAGGCACTAGAGTAGAGACCGGG
TCCTCACTAAGCAAAATGTCAGATGAGCAGACTTCCTCTTCCCTCGAGCAGCCCGCACTAGAGGAGGTCA
GAGACAAAAATAAGAATAGCCATGCCGCTGGAGCTAAAGAGTAA

Translation (527 aa):
MEPTEKLCKKMQGQEAGDKPRTAALETEGPLQDSALPIQDDQDKQSSLPRASLGKRPLSKTSEELMDAGT
CRVHKAPTAAACGPQSEEEGCSPPERKAESLKPSISAVPGQATAGSLNSHEGDLKKESLEVTCQFRKKTR
TLYRSDQLEELERIFQEDHYPDSDKRHEISQMVGVTPQRIMVWFQNRRAKWRKVEKLNEKETKNGPAAPS
ADSSQHRSAPELLDPMPTDLEPGPVPPENILDVFPEPPMLLTSEQTLTPFQNNEGAERVAVTPPLLSPPP
IRRANLPLPLGPVQTPQVLPPMRDVPGSDSIYKDKAYVSWGTSIASPPTYSNLEDLGSQDYQASSQLGSF
QLSQAPHLPLFPSLQSQFPYLPPFPYPIPSSMPFLPPEDSLFSFPFGFSGDSSQDYCPGPPPGQILLQPP
AENMGTGPWSGHCLPEPPFPRPHYPQALGQPLGAEGYFPNLLPTPYALTMSKQSSLGLNGLLEGTRVETG
SSLSKMSDEQTSSSLEQPALEEVRDKNKNSHAAGAKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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