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Report for CCDS20671.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20671.1 Public Mus musculus 6 Plcz1 23 108 98 CCDS HistoryNCBI Gene:114875Re-query CCDS DB by CCDS ID:20671.1Re-query CCDS DB by GeneID:114875See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20671.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032356.12 ENSMUSP00000032356.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032356.12Link to Ensembl Protein Viewer:ENSMUSP00000032356.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032356Re-query CCDS DB by Protein ID:ENSMUSP00000032356
Original member Current member NCBI NM_054066.4 NP_473407.2 Accepted alive Link to Nucleotide Sequence:NM_054066.4Link to Protein Sequence:NP_473407.2Re-query CCDS DB by Nucleotide ID:NM_054066Re-query CCDS DB by Protein ID:NP_473407Link to BLAST:NP_473407.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473407.2 647 Q8K4D7-1 647 100% 0 0

Chromosomal Locations for CCDS 20671.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 139989771 139989859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139990647 139990799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 139992923 139993049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140002080 140002252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140003866 140003982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140007605 140007761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140010414 140010653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140013542 140013691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140016086 140016230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140023118 140023319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140028324 140028555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140039655 140039778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 140040571 140040605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1944 nt):
ATGGAAAGCCAACTTCATGAGCTCGCAGAAGCAAGATGGTTTTTGTCAAAGGTTCAGGATGATTTTAGAG
GTGGAAAAATCAACGTTGAAATTACTCACAAACTGCTTGAGAAACTTGATTTCCCATGCCACTTTGCTCA
TGTGAAACATATTTTTAAGGAAAATGACAGACAGAACCAAGGAAGAATCACCATTGAAGAGTTTAGAGCC
ATTTACCGGTGTATTGTACATAGAGAAGAAATCACGGAGATTTTCAACACGTATACTGAAAATAGGAAAA
TTCTTTCTGAGAACAGTCTGATTGAGTTTCTAACCCAAGAGCAGTATGAAATGGAGATCGATCACTCTGA
TTCAGTAGAGATCATCAATAAGTATGAGCCCATTGAAGAAGTAAAGGGTGAGCGACAGATGTCAATTGAA
GGTTTCGCAAGATACATGTTTTCATCAGAATGTCTACTGTTTAAAGAGAACTGTAAAACCGTGTACCAAG
ATATGAATCATCCATTAAGTGATTATTTTATTTCATCATCTCACAACACATATTTGATATCCGATCAAAT
ATTGGGACCGAGTGACATTTGGGGATATGTAAGTGCTCTTGTGAAAGGCTGCCGCTGTCTGGAAATTGAC
TGCTGGGATGGATCCCAAAATGAACCCATTGTGTACCATGGTTACACATTCACCAGCAAGCTTCTCTTCA
AAACTGTGGTCCAAGCAATAAACAAGTATGCCTTTGTGACATCTGATTACCCAGTAGTGCTGTCCTTAGA
AAATCACTGCTCCCCTGGTCAGCAGGAAGTGATGGCTAGCATTCTGCAGAGCACCTTTGGAGACTTCCTG
CTTTCGGACATGCTTGAGGAGTTTCCAGATACACTACCGTCTCCAGAGGCACTAAAATTCAAAATATTAG
TGAAAAACAGGAAAGTGGGAACCTTATCTGAAACCCACGAGAGGATAGGAACCGACAAAAGTGGCCAAGT
GCTAGAATGGAAAGAAGTCATCTATGAAGATGGTGATGAAGACTCAGGAATGGATCCAGAAACATGGGAT
GTCTTCCTATCACGGATCAAGGAGGAGAGGGAAGCAGATCCCTCGACATTGAGTGGAATAGCAGGCGTCA
AGAAAAGGAAGAGGAAGATGAAAATAGCCATGGCCTTATCTGATCTTGTCATTTATACTAAGGCTGAGAA
GTTCCGAAACTTCCAATATTCAAGAGTCTATCAGCAATTTAATGAGACCAATTCGATTGGAGAGTCTCGA
GCTCGAAAACTTTCCAAATTGAGAGTCCATGAGTTTATTTTCCACACCGCGGCATTCATCACCAGAGTAT
ACCCCAAAATGATGAGAGCAGACTCTTCTAACTTTAACCCTCAAGAGTTTTGGAATGTAGGATGTCAGAT
GGTGGCCTTGAACTTTCAAACCCCTGGACTGCCTATGGATTTGCAAAACGGGAAATTTTTGGATAATGGA
GGCTCTGGATATATTTTGAAGCCAGACATCCTTAGAGATACAACCCTGGGCTTTAACCCAAATGAACCAG
AATATGACGACCATCCAGTTACCCTCACAATCCGAATCATCAGTGGGATCCAGTTGCCTGTTAGCTCATC
CTCTAACACGCCTGACATAGTAGTGATCATAGAAGTCTACGGTGTTCCAAACGACCACGTGAAGCAGCAG
ACTCGTGTTGTTAAGAATAATGCTTTTAGTCCAAAGTGGAATGAAACATTTACATTTCTTATTCAAGTGC
CAGAACTGGCATTGATACGTTTTGTTGTTGAAACTCAACAAGGCTTATTATCAGGAAATGAATTACTCGG
GCAGTACACTTTACCAGTTCTTTGCATGAACAAAGGTTATCGTCGTGTTCCTCTGTTTTCCAAATCCGGT
GCGAACCTTGAACCTTCCTCACTGTTTATTTATGTTTGGTACTTCAGAGAGTGA

Translation (647 aa):
MESQLHELAEARWFLSKVQDDFRGGKINVEITHKLLEKLDFPCHFAHVKHIFKENDRQNQGRITIEEFRA
IYRCIVHREEITEIFNTYTENRKILSENSLIEFLTQEQYEMEIDHSDSVEIINKYEPIEEVKGERQMSIE
GFARYMFSSECLLFKENCKTVYQDMNHPLSDYFISSSHNTYLISDQILGPSDIWGYVSALVKGCRCLEID
CWDGSQNEPIVYHGYTFTSKLLFKTVVQAINKYAFVTSDYPVVLSLENHCSPGQQEVMASILQSTFGDFL
LSDMLEEFPDTLPSPEALKFKILVKNRKVGTLSETHERIGTDKSGQVLEWKEVIYEDGDEDSGMDPETWD
VFLSRIKEEREADPSTLSGIAGVKKRKRKMKIAMALSDLVIYTKAEKFRNFQYSRVYQQFNETNSIGESR
ARKLSKLRVHEFIFHTAAFITRVYPKMMRADSSNFNPQEFWNVGCQMVALNFQTPGLPMDLQNGKFLDNG
GSGYILKPDILRDTTLGFNPNEPEYDDHPVTLTIRIISGIQLPVSSSSNTPDIVVIIEVYGVPNDHVKQQ
TRVVKNNAFSPKWNETFTFLIQVPELALIRFVVETQQGLLSGNELLGQYTLPVLCMNKGYRRVPLFSKSG
ANLEPSSLFIYVWYFRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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