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Report for CCDS51570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51570.1 Public Mus musculus 5 Rasgef1b 23 108 98 CCDS HistoryNCBI Gene:320292Re-query CCDS DB by CCDS ID:51570.1Re-query CCDS DB by GeneID:320292See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168092.7 ENSMUSP00000129652.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168092.7Link to Ensembl Protein Viewer:ENSMUSP00000129652.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168092Re-query CCDS DB by Protein ID:ENSMUSP00000129652
Original member Current member NCBI NM_181318.4 NP_851835.1 Accepted alive Link to Nucleotide Sequence:NM_181318.4Link to Protein Sequence:NP_851835.1Re-query CCDS DB by Nucleotide ID:NM_181318Re-query CCDS DB by Protein ID:NP_851835Link to BLAST:NP_851835.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851835.1 472 Q8JZL7-2 472 100% 0 0

Chromosomal Locations for CCDS 51570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 99218774 99218798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99221361 99221433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99222318 99222441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99222940 99223035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99227988 99228083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99229321 99229400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99232091 99232193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99232302 99232397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99233915 99233989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99234476 99234688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99240823 99240960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99241409 99241531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 99243064 99243240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGCCTCAGACGCCCCCCTTCTCAGCAATGTTTGACAGCAGTGGCTACAACCGAAACCTCTACCAGTCCG
CA
GAGGACAGCTGTGGAGGCTTGTACTACCATGACAACAACCTCCTTTCTGGGTCTCTGGAAGCCCTTAT
C
CAACACTTGGTACCCAATGTGGATTACTATCCTGATAGGACATACATCTTCACCTTCCTGCTTAGTTCT
CGG
TTATTCATGCATCCGTACGAGCTCATGGCTAAGGTTTGCCACCTGTGTGTTGAGCACCAGCGACTGA
GT
GAAGGGGACGGCGATAAGAACCAGATGAGAAAAATTGCACCTAAAATCCTTCAGCTCTTGACAGAGTG
G
ACAGAAACATTTCCGTATGACTTCCGGGACGAGAGAATGATGAGGAACCTCAAGGACCTGGCGCACAGG
ATG
GCCAGTGGCGAGGAGACGTACCGGAAGAACGTCCAGCAGATGATGCAGTGTCTGATCCGAAAACTCG
CC
GCCCTCAGCCAGTATGAGGAAGTCCTGGCCAAACTCAGCTCCACAGCCACGGACCGGCTCACGGTTCT
G
AAGACCAAGCCCCAGTCCATACAGCGGGACATCATGACCGTCTGCAGCGACCCTTACACATTGGCCCAG
CAG
CTGACCCACATCGAGCTGGAGAGACTCAATTACATTGGCCCAGAAGAGTTTGTTCAGGCATTTGTGC
AG
AAGGATCCTTTGGACAACGATAAGAGTTGCTACAGCGAACGGAAGAAAACACGGAACTTGGAGGCGTA
C
GTAGAATGGTTTAATCGTCTAAGCTACTTGGTTGCTACAGAAATCTGCATGCCTGTGAAGAAGAAGCAC
CGA
GCGAGGATGATCGAGTATTTCATCGATGTGGCTCGAGAGTGTTTCAACATTGGAAACTTCAATTCTT
TG
ATGGCAATCATCTCTGGTATGAATATGAGCCCGGTCTCGAGACTTAAGAAAACCTGGGCCAAAGTGAA
G
ACTGCAAAGTTTGACATTCTTGAGCATCAGATGGATCCATCCAGCAATTTCTACAACTACAGAACGGCT
CTC
CGAGGGGCAGCGCAAAGGTCCCTGACTGCTCACAGTAGCAGAGAGAAGATTGTGATACCATTCTTCA
GT
CTCTTAATCAAAGACATTTATTTCCTCAACGAGGGCTGTGTCAACCGTCTTCCAAATGGCCATGTCAA
C
TTTGAGAAATTTTGGGAACTGGCCAAACAAGTGAGTGAATTTATGACATGGAAACAGGTGGAGTGTCCG
TTC
GAGCGGGACCGGAAGGTCTTACAATACCTGCTCTCCGTGCCTGTATTCAGTGAAGATGCGCTCTACT
TG
GCTTCATACGAGAGTGAAGGACCCGAAAATAATATAGAGAAGGACAGATGGAAGTCTTTAAGGTCCAG
C
CTTTTGGGCAGAGTTTAA


Translation (472 aa):
MPQTPPFSAMFDSSGYNRNLYQSAEDSCGGLYYHDNNLLSGSLEALIQHLVPNVDYYPDRTYIFTFLLSS
R
LFMHPYELMAKVCHLCVEHQRLSEGDGDK
NQMRKIAPKILQLLTEWTETFPYDFRDERMMRNLKDLAHR
M
ASGEE
TYRKNVQQMMQCLIRKLAALSQYEEVLAKLSSTATDRLTVLKTKPQSIQRDIMTVCSDPYTLAQ
Q
LTHIEL
ERLNYIGPEEFVQAFVQKDPLDNDKSCYSERKKTRNLEAYVEWFNRLSYLVATEICMPVKKKH
R
ARMIEYFIDVARECFNIGNFNSLMAII
SGMNMSPVSRLKKTWAKVKTAKFDILEHQMDPSSNFYNYRTA
L
RGAAQRSLTAHSSREK
IVIPFFSLLIKDIYFLNEGCVNRLPNGHVNFEKFWELAKQVSEFMTWKQVECP
F
ERDRKVLQYLLSVPVFSED
ALYLASYESEGPENNIEKDRWKSLRSSLLGRV



Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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