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Report for CCDS38427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38427.1 Public Mus musculus 3 Rab33b 23 108 98 CCDS HistoryNCBI Gene:19338Re-query CCDS DB by CCDS ID:38427.1Re-query CCDS DB by GeneID:19338See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38427.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054387.7 ENSMUSP00000063054.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054387.7Link to Ensembl Protein Viewer:ENSMUSP00000063054.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054387Re-query CCDS DB by Protein ID:ENSMUSP00000063054
Original member Current member NCBI NM_016858.2 NP_058554.1 Accepted alive Link to Nucleotide Sequence:NM_016858.2Link to Protein Sequence:NP_058554.1Re-query CCDS DB by Nucleotide ID:NM_016858Re-query CCDS DB by Protein ID:NP_058554Link to BLAST:NP_058554.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058554.1 229 O35963 229 100% 0 0

Chromosomal Locations for CCDS 38427.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51484332 51484580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51493356 51493796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGACTTCGGAGATGGAGTCGTCGCTGGAGGTCAGCTTCTCGTCCAGCTGTGCGGTGTCAGGGGCGTCTG
GGTGTTTGCCTCCCGCCCGCTCCCGCATCTTCAAGATCATAGTGATCGGCGACTCGAACGTGGGCAAGAC
GTGCCTGACTTACCGCTTCTGCGCCGGCCGCTTCCCCGACCGCACCGAGGCCACGATCGGGGTGGACTTC
CGAGAGCGAGCCGTGGATATTGATGGAGAGCGCATCAAGATCCAGTTGTGGGACACGGCAGGGCAGGAGC
GGTTCAGGAAGAGCATGGTCCAGCACTACTACAGGAATGTGCATGCTGTCGTCTTTGTGTATGACATGAC
CAACATGGCCAGCTTCCACAGCCTGCCGGCTTGGATAGAGGAATGCAAACAGCACTTGCTGGCGAACGAC
ATACCTCGAATTCTGGTGGGAAATAAATGTGACTTGAGAAGCGCCATTCAGGTGCCCACAGACTTGGCAC
AGAAGTTTGCTGACACACACAGTATGCCTTTGTTTGAGACCTCTGCTAAAAACCCCAATGATAATGACCA
CGTAGAAGCTATATTCATGACCTTAGCTCATAAGCTAAAGAGCCACAAGCCATTGATGCTTAGCCAGCTG
CCTGATAACAGAATTAGCCTGAAACCTGAGACCAAGCCTGCGGTGACTTGCTGGTGCTGA

Translation (229 aa):
MTSEMESSLEVSFSSSCAVSGASGCLPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDF
RERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND
IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLSQL
PDNRISLKPETKPAVTCWC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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