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Report for CCDS36111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36111.1 Public Mus musculus 11 Vwc2 23 108 98 CCDS HistoryNCBI Gene:319922Re-query CCDS DB by CCDS ID:36111.1Re-query CCDS DB by GeneID:319922See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36111.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056344.4 ENSMUSP00000049692.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056344.4Link to Ensembl Protein Viewer:ENSMUSP00000049692.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000056344Re-query CCDS DB by Protein ID:ENSMUSP00000049692
Original member Current member EBI ENSMUST00000109681.7 ENSMUSP00000105303.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109681.7Link to Ensembl Protein Viewer:ENSMUSP00000105303.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109681Re-query CCDS DB by Protein ID:ENSMUSP00000105303
Original member Current member EBI ENSMUST00000129670.7 ENSMUSP00000128761.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129670.7Link to Ensembl Protein Viewer:ENSMUSP00000128761.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129670Re-query CCDS DB by Protein ID:ENSMUSP00000128761
Original member Current member NCBI NM_177033.3 NP_796007.1 Accepted alive Link to Nucleotide Sequence:NM_177033.3Link to Protein Sequence:NP_796007.1Re-query CCDS DB by Nucleotide ID:NM_177033Re-query CCDS DB by Protein ID:NP_796007Link to BLAST:NP_796007.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796007.1 324 Q8C8N3 324 100% 0 0

Chromosomal Locations for CCDS 36111.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 11115914 11116606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11154163 11154292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11261369 11261520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGCCTAGCTCCTCTGCGATGGCAGTTGGCGCGCTCTCCAGTTCCCTCTTGGTCACCTGCTGCCTGATGG
TGGCTCTGTGCAGTCCGAGCATCCCGCTGGAGAAGCTGGCCCAAGCTCCTGAGCAACCCGGCCAGGAGAA
GCGCGAGCACGCGTCTCGGGACAGCCCGGGGCGGGTGAGCGAGCTCGGGCGCGCCTCGAGGGACGAGGGC
AGCAGTGCCCGGGACTGGAAGAGCAAGGGCAGCCGCGCGCTCTCGGGCCGGGAGGCGTGGAGCAAGCAGA
AGCAGGCCTGGGCTGCCCAGGGCGGGAGCGCCAAGGCCGCGGACTGGCAGGTCCGGCCTCGCGGGGATAC
CCCACAGGGGGAGCCCCCGGCCGCCGCCCAGGAAGCTATCAGCCTGGAACTCGTTCCCACACCGGAGCTG
CCTGAGGAATACGCCTACCCGGACTACCGCGGGAAGGGCTGTGTGGACGAGAGTGGCTTCGTGTATGCGA
TCGGGGAGAAGTTCGCCCCAGGTCCCTCAGCCTGCCCGTGTCTGTGTACGGAGGAGGGGCCCCTTTGCGC
ACAGCCAGAGTGCCCACGGCTTCACCCGCGCTGCATCCACGTCGACAACAGCCAGTGCTGTCCGCAGTGC
AAGGAGAAGAAGAACTACTGCGAGTTCCGGGGCAAGACCTACCAGACTTTGGAGGAGTTTGTGGTGTCTC
CATGTGAACGGTGCCGCTGTGAAGCCAATGGTGAAGTGCTGTGCACAGTGTCGGCGTGTCCCCAGACGGA
ATGTGTGGACCCCGTATATGAGCCTGATCAGTGCTGCCCGATCTGCAAAAACGGTCCAAACTGCTTTGCA
GAAACCGCTGTAATCCCAGCTGGTAGAGAGGTGAAGACTGACGAGTGCACCATATGTCACTGCACTTATG
AAGAGGGCACGTGGAGAATTGAACGGCAAGCCATGTGCACGAGACATGAGTGCAGACAAATGTAG

Translation (324 aa):
MPSSSAMAVGALSSSLLVTCCLMVALCSPSIPLEKLAQAPEQPGQEKREHASRDSPGRVSELGRASRDEG
SSARDWKSKGSRALSGREAWSKQKQAWAAQGGSAKAADWQVRPRGDTPQGEPPAAAQEAISLELVPTPEL
PEEYAYPDYRGKGCVDESGFVYAIGEKFAPGPSACPCLCTEEGPLCAQPECPRLHPRCIHVDNSQCCPQC
KEKKNYCEFRGKTYQTLEEFVVSPCERCRCEANGEVLCTVSACPQTECVDPVYEPDQCCPICKNGPNCFA
ETAVIPAGREVKTDECTICHCTYEEGTWRIERQAMCTRHECRQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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