NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25649.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25649.1 Public Mus musculus 11 Llgl2 23 108 98 CCDS HistoryNCBI Gene:217325Re-query CCDS DB by CCDS ID:25649.1Re-query CCDS DB by GeneID:217325See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25649.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103032.10 ENSMUSP00000099321.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103032.10Link to Ensembl Protein Viewer:ENSMUSP00000099321.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000103032Re-query CCDS DB by Protein ID:ENSMUSP00000099321
Original member Current member NCBI NM_145438.2 NP_663413.2 Accepted alive Link to Nucleotide Sequence:NM_145438.2Link to Protein Sequence:NP_663413.2Re-query CCDS DB by Nucleotide ID:NM_145438Re-query CCDS DB by Protein ID:NP_663413Link to BLAST:NP_663413.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663413.2 1027 Q3TJ91 1027 100% 0 0

Chromosomal Locations for CCDS 25649.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115834828 115834902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115843317 115843414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115844494 115844575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115844835 115844950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115845374 115845532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115846921 115847083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115847171 115847303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115847589 115847643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115848186 115848340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115849516 115849733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115849811 115849878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115849996 115850149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115850238 115850342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115850627 115850919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115851008 115851158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115852117 115852273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115853031 115853147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115853268 115853434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115853717 115853981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115854193 115854355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115854547 115854575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115854812 115854859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115855063 115855105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115855192 115855253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115855466 115855473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3084 nt):
ATGAGGCGGTTCCTGAGAACTGGACATGACCCTGCCCGGGAGAGGCTGAAGCGGGATCTGTTCCAGTTTA
ACAAGACAGTGGAGCATGGCTTCCCACACCAGCCCAGCGCCCTTGGCTATAGCCCTTCGCTGCGCATCCT
GGCCATCGGAACCCGCTCTGGAGCTGTCAAGCTATATGGCGCCCCCGGGGTAGAGTTCATGGGCCTTCAC
AAGGAGAACAACGCAGTGCTGCAGATCCACTTCCTGCCTGGTCAGTGTCAGCTGGTCACTCTGCTGGATG
ACAATAGCCTGCACCTGTGGAGCCTGAAGGTCAAGGGCGGGGTGTCAGAGCTGCAGGAAGAAGAGAGCTT
CACATTGCGTGGCCCCCCAGGGGCTGCCCCCAGTGCCACGCAGGTCACTGAGATTCTACCTCACTCTTCC
GGAGAACTGCTCTACCTGGGCACCGAGAGCGGCAACGTGTTTGTGGTGCAGCTCCCGGGGTTCCGCACGC
TGCACGACAGGACCATCTGTTCAGATGAGGTGCTGCAATGGTTGCCAGAGGAGGCTCGCCACCGGCGAGT
GTTTGAGATGGTGGAGGCTCTGCAGGAGCACCCTCGAGACCCCAACCAAATCCTCATTGGCTACAGCCGA
GGCCTCGTCGTCATCTGGGACCTTCAGGGCAGCCGAGCGCTCAGTCATTTCCTCAGCAGCCAGCAACTGG
AGAATGCCAGCTGGCAGCGGGATGGCTGCCTGATTGTCACCTGCCACTCCGACGGCAGCCACTGCCAGTG
GCCCGTCTCCAGTGACACCCAGAACCCAGAACCTCTGCGCAGCTCTATACCTTACGGTCCCTTTCCTTGC
AAAGCTATAACGAAAATCTTCTGGCTCACCACCAGGCAAGGGTTGCCCTTCACCATCTTCCAGGGCGGTA
TGCCACGGGCCAGCTATGGGGACCGCCACTGCATCTCAGTGGTCCACAACGGCCAGCAGACGGCCTTCGA
CTTCACCTCCCGTGTCATTGACTTCACTGTTCTCTCAGAGGCTGACCCTGCGGCTGCCTTTGATGACCCC
TACGCCCTGGTGGTGCTAGCCGAGGAGGAACTGGTAGTCATTGACCTGCAGACACCCGGCTGGCCACCAG
TCCAGCTGCCCTACCTGGCTTCCTTGCACTGTTCCGCTATCACCTGCTCCCACCACGTCTCCAACATCCC
CCTGAAGCTATGGGAACGCATCATCGCCGCGGGCAGCCGCCAGAACTCACACTTCTCCACCATGGAGTGG
CCCATAGATGGTGGCACCAGCCTGGCCCCACCGCCACCCCAGAGGGACCTGCTGCTCACAGGGCACGAGG
ACGGCACGGTGCGGTTCTGGGACGCCTCCGGTGTGTGCTTACGTCTGCTCTACAAACTGAGCACTGTGAG
GGTGTTCCTCACAGACACGGACCCCAGCGAGAACCTCATTGCCCAGGGTGAGGACGAGTGGCCCCCACTC
CGCAAGGTGGGCTCCTTTGATCCCTACAGCGATGATCCGCGGCTAGGCATCCAGAAGATTTTCCTCTGCA
AATACAGCGGCTACCTGGCTGTGGCAGGCACGGCAGGGCAGGTGCTGGTGCTGGAGTTGAACGATGAGGC
GGCCGAGCATGCTGTGGAGCAGGTGGAGGCTGACCTGCTGCAGGACCAGGAGGGTTACCGCTGGAAGGGG
CACGAGCGCCTCGCCGCCCGCCCGGGGCCCGTGTGCTTTGAGGCGGGATTTCAGCCCTTTGTACTGGTGC
AGTGCCAGCCCCCAGCTGTGGTCACCTCCTTGGCTCTGCACTCCGAGTGGCGGCTTGTGGCCTTTGGCAC
CAGCCATGGTTTCGGCCTCTTCGATCACCAGCAACGGCGGCAGGTCTTTGTCAAGTGCACACTTCACCCC
AGTGACCAGCTGGCCTTGGAGGGCCCTCTGTCTCGAGTAAAGTCCCTCAAGAAGTCTCTACGTCAGTCAT
TCCGTCGGATGCGTCGCAGCAGAGTGTCCAGTCATAAACGGCGGCCTGGTGGCCCCACAGGCGAGGCGCA
GGCCCAGGCTGTGAATATCAAGGCTGAGCGGACGGGCCTGCAGAACATGGAGTTGGCGCCCGTGCAACGG
AAGATTGAGGCTCGCTCCGCGGAGGACTCCTTCACTGGCTTTGTCCGGACCCTCTATTTCGCTGATACCT
ACCTGAGGGACAGTTCCCGCCACTGTCCCTCCCTGTGGGCTGGCACCAACGGAGGCACCGTCTACGCCTT
TTCCCTGCGCGTGCCTCCTGCAGAAAGAAGAACAGATGAACCTGTCCGGGCAGAGCAGGCCAAGGAGATC
CAGCTGATGCATCGCGCGCCTGTGGTGGGCATCCTGGTGCTCGACGGACACAACGTGCCCCTCCCCGAGC
CCCTGGAAGTCGCCCATGACCTGTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTC
GGAGGAGCAATTCAAGGTATTCACACTGCCCAAGGTGAGCGCCAAACTGAAGCTGAAGCTGACGGCCCTG
GAGGGCTCACGGGTGCGGCGAGTCGGTGTCGCCCACTTTGGCAGCTGCAGGGCTGAGGACTATGGGGAGC
ACCACCTGGCAGTGCTCACCAACTTGGGTGACATCCAGGTGGTCTCAATGCCCCTGCTCAAGCCCCAGGT
GCGGTACAGCTGCATCCGCCGGGAGGACGTCAGCGGCATAGCTTCCTGTGTCTTCACCAAATATGGCCAA
GGTTTCTATCTGATATCACCTTCGGAGTTCGAGCGCTTTTCTCTCTCCACCAAGTGGCTGGTTGAACCCC
GGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACAGGCCTCAA
AATGACCTCCTCAGGCCACGTCAGGAACTCAAAGAGCCAAAGTGATGGAGATGAGAAGAAGCCGGGCCCA
GTGATGGAGCACGCGCTGCTCAATGACGCCTGGGTCCTAAAGGAAATCCAGAGCACGCTGGAGGGGGACC
GGAGGAGCTATGGCAATTGGCATCCTCACCGCGTGGCTGTGGGTTGCAGGCTCAGCAATGGAGAAGCAGA
ATGA

Translation (1027 aa):
MRRFLRTGHDPARERLKRDLFQFNKTVEHGFPHQPSALGYSPSLRILAIGTRSGAVKLYGAPGVEFMGLH
KENNAVLQIHFLPGQCQLVTLLDDNSLHLWSLKVKGGVSELQEEESFTLRGPPGAAPSATQVTEILPHSS
GELLYLGTESGNVFVVQLPGFRTLHDRTICSDEVLQWLPEEARHRRVFEMVEALQEHPRDPNQILIGYSR
GLVVIWDLQGSRALSHFLSSQQLENASWQRDGCLIVTCHSDGSHCQWPVSSDTQNPEPLRSSIPYGPFPC
KAITKIFWLTTRQGLPFTIFQGGMPRASYGDRHCISVVHNGQQTAFDFTSRVIDFTVLSEADPAAAFDDP
YALVVLAEEELVVIDLQTPGWPPVQLPYLASLHCSAITCSHHVSNIPLKLWERIIAAGSRQNSHFSTMEW
PIDGGTSLAPPPPQRDLLLTGHEDGTVRFWDASGVCLRLLYKLSTVRVFLTDTDPSENLIAQGEDEWPPL
RKVGSFDPYSDDPRLGIQKIFLCKYSGYLAVAGTAGQVLVLELNDEAAEHAVEQVEADLLQDQEGYRWKG
HERLAARPGPVCFEAGFQPFVLVQCQPPAVVTSLALHSEWRLVAFGTSHGFGLFDHQQRRQVFVKCTLHP
SDQLALEGPLSRVKSLKKSLRQSFRRMRRSRVSSHKRRPGGPTGEAQAQAVNIKAERTGLQNMELAPVQR
KIEARSAEDSFTGFVRTLYFADTYLRDSSRHCPSLWAGTNGGTVYAFSLRVPPAERRTDEPVRAEQAKEI
QLMHRAPVVGILVLDGHNVPLPEPLEVAHDLSKSPDMQGSHQLLVVSEEQFKVFTLPKVSAKLKLKLTAL
EGSRVRRVGVAHFGSCRAEDYGEHHLAVLTNLGDIQVVSMPLLKPQVRYSCIRREDVSGIASCVFTKYGQ
GFYLISPSEFERFSLSTKWLVEPRCLVDSTKAKKHNRPSNGNGTGLKMTSSGHVRNSKSQSDGDEKKPGP
VMEHALLNDAWVLKEIQSTLEGDRRSYGNWHPHRVAVGCRLSNGEAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH